Version Differences for PBcR
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(→Performance)
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(→Performance)
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| We used all SMRT cells to do assembly and evaluated the assemblies by QUAST against the reference genome ([ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Meiothermus_ruber_DSM_1279_uid46661/ NC_013946]) and [[Media:gene_mruber.ncbi | Mr_gene_list]]. ([http://sb.nhri.org.tw/comps/quast/Non-hybrid/PBcR_pipeline/D7/report.html more detail]) | We used all SMRT cells to do assembly and evaluated the assemblies by QUAST against the reference genome ([ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Meiothermus_ruber_DSM_1279_uid46661/ NC_013946]) and [[Media:gene_mruber.ncbi | Mr_gene_list]]. ([http://sb.nhri.org.tw/comps/quast/Non-hybrid/PBcR_pipeline/D7/report.html more detail]) | ||
| ==Performance== | ==Performance== | ||
| - | PBcR -pbCNS -length 500 -partitions 200 -l ecoli -s pacbio.spec -fastq filtered_subreads.fastq | + | PBcR -pbCNS -length 500 -partitions 200 -l mruber -s pacbio.spec -fastq filtered_subreads.fastq |
| - | PBcR -pbCNS -length 500 -partitions 200 -l ecoli -s pacbio.spec -fastq filtered_subreads.fastq genomeSize=3100000 | + | PBcR -pbCNS -length 500 -partitions 200 -l mruber -s pacbio.spec -fastq filtered_subreads.fastq genomeSize=3100000 |
| - | PBcR -pbCNS -length 500 -partitions 200 -l ecoli -s pacbio.spec -fastq filtered_subreads.fastq genomeSize=2790000 | + | PBcR -pbCNS -length 500 -partitions 200 -l mruber -s pacbio.spec -fastq filtered_subreads.fastq genomeSize=2790000 |
| - | PBcR -pbCNS -length 500 -partitions 200 -l ecoli -s pacbio.spec -fastq filtered_subreads.fastq genomeSize=3410000 | + | PBcR -pbCNS -length 500 -partitions 200 -l mruber -s pacbio.spec -fastq filtered_subreads.fastq genomeSize=3410000 |
| - | PBcR -pbCNS -length 500 -partitions 200 -l ecoli -s pacbio.spec -fastq filtered_subreads.fastq genomeSize=2480000 | + | PBcR -pbCNS -length 500 -partitions 200 -l mruber -s pacbio.spec -fastq filtered_subreads.fastq genomeSize=2480000 |
| - | PBcR -pbCNS -length 500 -partitions 200 -l ecoli -s pacbio.spec -fastq filtered_subreads.fastq genomeSize=3720000 | + | PBcR -pbCNS -length 500 -partitions 200 -l mruber -s pacbio.spec -fastq filtered_subreads.fastq genomeSize=3720000 |
| without genomeSize | without genomeSize | ||