Version Differences for PBcR

(→還沒)
(→還沒)
Line 27:
  |# contigs||[[Media:f25X_d5_all_wog.fa | 1]]||[[Media:f25X_d5_rg4_1_wog.fa | 4]]||[[Media:f25X_d5_rg4_2.fa | 1]]||[[Media:f25X_d5_rg4_3_wog.fa | 6]]||[[Media:f25_d5_rg6_1_wog.fa | 1]]||[[Media:f25X_d5_rg6_2_wog.fa | 1]]||[[Media:f25X_d5_rg6_3_wog.fa | 1]]||[[Media:f25X_d5_rg8_1_wog.fa | 1]]||[[Media:f25X_d5_rg8_2_wog.fa | 1]]||[[Media:f25_d5_rg8_3_wog.fa | 1]]    |# contigs||[[Media:f25X_d5_all_wog.fa | 1]]||[[Media:f25X_d5_rg4_1_wog.fa | 4]]||[[Media:f25X_d5_rg4_2.fa | 1]]||[[Media:f25X_d5_rg4_3_wog.fa | 6]]||[[Media:f25_d5_rg6_1_wog.fa | 1]]||[[Media:f25X_d5_rg6_2_wog.fa | 1]]||[[Media:f25X_d5_rg6_3_wog.fa | 1]]||[[Media:f25X_d5_rg8_1_wog.fa | 1]]||[[Media:f25X_d5_rg8_2_wog.fa | 1]]||[[Media:f25_d5_rg8_3_wog.fa | 1]] 
  |-    |- 
- |Largest contig||4 648 864||3 621 580||4 639 780||2 212 593||4 651 575||4 645 728||4 647 827||4 649 239||4 648 687||4 648 099   + |Largest contig||4649001 3622531 4647261 3760960 4648404 4654462 4647823 4649251 4648711 4648069  
  |-    |- 
- |Total length||4 648 864||4 602 589||4 639 780||4 661 453||4 651 575||4 645 728||4 647 827||4 649 239||4 648 687||4 648 099   + |Total length||4649001 4638443 4647261 4661578 4648404 4654462 4647823 4649251 4648711 4648069  
  |-    |- 
- |N50||4 648 864||3 621 580||4 639 780||887 256||4 651 575||4 645 728||4 647 827||4 649 239||4 648 687||4 648 099   + |N50||4649001 3622531 4647261 3760960 4648404 4654462 4647823 4649251 4648711 4648069  
  |-    |- 
  | style="background:#f0f0f0;"| [[Media: SCA_D5.pdf | '''Misassemblies''']]||||||||||||||||||||    | style="background:#f0f0f0;"| [[Media: SCA_D5.pdf | '''Misassemblies''']]|||||||||||||||||||| 
Line 37:
- |# misassemblies||10||8||8||8||8||8||10||9||8||8   + |# misassemblies||10 8 8 10 8 8 10 9 8 8  
  |-    |- 
- |Misassembled contigs length ||4 648 864||3 621 580||4 639 780||3 857 726||4 651 575||4 645 728||4 647 827||4 649 239||4 648 687||4 648 099   + |Misassembled contigs length ||4649001 3622531 4647261 3864655 4648404 4654462 4647823 4649251 4648711 4648069  
  |-    |- 
  | style="background:#f0f0f0;"| '''Mismatches'''||||||||||||||||||||    | style="background:#f0f0f0;"| '''Mismatches'''|||||||||||||||||||| 
Line 43:
- |# mismatches per 100kbp||0.19||0.54||0.37||0.34||0.17||0.09||0.15||0.34||0.09||0.11   + |# mismatches per 100kbp||0.19 0.5 0.26 0.97 0.22 0.280 0.26 0.26 0.09 0.13  
  |-    |- 
- |# indels per 100kbp||1.59||24.54||22.42||15.82||6.38||10.22||5.63||4.38||5.32||6.06   + |# indels per 100kbp||1.64 26.42 20.150 15.86 6.66 10.76 5.82 4.1 5.3 6.68  
  |-    |- 
  |# N's per 100kbp ||0||0||0||0||0||0||0||0||0||0    |# N's per 100kbp ||0||0||0||0||0||0||0||0||0||0 
Line 49:
  | style="background:#f0f0f0;"| '''Genome Statistics'''||||||||||||||||||    | style="background:#f0f0f0;"| '''Genome Statistics'''|||||||||||||||||| 
  |-    |- 
- |Genome fraction(%) ||100||99.169||99.965||99.981||100||100||100||100||100||100   + |Genome fraction(%) || 100 99.942 100 99.999 100 100 100 100 100 100  
  |-    |- 
- |Duplication ratio ||1.002||1||1||1.003||1.003||1.001||1.002||1.002||1.002||1.002   + |Duplication ratio ||1.002 1 1.002 1.006 1.002 1.003 1.002 1.002 1.002 1.002  
  |-    |- 
- |# genes ||4494+3 part||4458+8 part||4491+5 part||4491+6 part||4494+3 part||4494+3 part||4494+3 part||4494+3 part||4494+3 part||4493+3 part   + |# genes ||4494 + 3 part 4488 + 8 part 4494 + 3 part 4492 + 5 part 4494 + 3 part 4495 + 2 part 4494 + 3 part 4494 + 3 part 4494 + 3 part 4494 + 3 part  
  |-    |- 
- |NGA50 ||3 026 386||907 076||1 097 763||880 448||3 026 238||2 603 928||3 026 270||1 257 068||2 856 673||2 856 687   + |NGA50 ||3026385 907188 949093 880427 3026217 3026142 3026271 1257063 2856677 2856668  
  |-    |- 
- | align="left" style="background:#f0f0f0;"|''' Running Time '''||12hr 14m||26m 16s||35m 50s||33m 3s||53m 36s||48m 9s||2hr 21m||2hr 43s||1hr 2m||53m 3s   + | align="left" style="background:#f0f0f0;"|''' Running Time '''||6hr 14m||30m 13s||39m 45s||33m 56s||1hr 5m||48m 4s||1hr 2m||1hr 22m||1hr 31m||1hr 26m  
  |}    |}