Version Differences for PBcR
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(→Performance)
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(→genomeSize)
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| Line 324: | |||
| PBcR -pbCNS -length 500 -partitions 200 -l ecoli -s pacbio.spec -fastq filtered_subreads.fastq genomeSize=5580000 | PBcR -pbCNS -length 500 -partitions 200 -l ecoli -s pacbio.spec -fastq filtered_subreads.fastq genomeSize=5580000 | ||
| - | =genomeSize=4650000= | + | =1= |
| + | genomeSize=4650000 | ||
| {| {{table}} border="1" | {| {{table}} border="1" | ||
| Line 370: | |||
| | align="left" style="background:#f0f0f0;"|''' Running Time '''||35m 5s||17m 43s||18m 14s||16m 12s||26m 17s||26m 9s||27m 2s | | align="left" style="background:#f0f0f0;"|''' Running Time '''||35m 5s||17m 43s||18m 14s||16m 12s||26m 17s||26m 9s||27m 2s | ||
| |} | |} | ||
| + | =2= | ||
| genomeSize=4185000 | genomeSize=4185000 | ||
| {| {{table}} border="1" | {| {{table}} border="1" | ||
| Line 415: | |||
| | align="left" style="background:#f0f0f0;"|''' Running Time '''||33m 51s||17m 26s||18m 7s||16m 23s||25m 54s||24m 48s||26m 8s | | align="left" style="background:#f0f0f0;"|''' Running Time '''||33m 51s||17m 26s||18m 7s||16m 23s||25m 54s||24m 48s||26m 8s | ||
| |} | |} | ||
| + | =3= | ||
| genomeSize = 5115000 | genomeSize = 5115000 | ||
| {| {{table}} border="1" | {| {{table}} border="1" | ||
| Line 460: | |||
| | align="left" style="background:#f0f0f0;"|''' Running Time '''||36m 41s||17m 52s||18m 22s||16m 44s||27m 49s||26m 54s||27m 59s | | align="left" style="background:#f0f0f0;"|''' Running Time '''||36m 41s||17m 52s||18m 22s||16m 44s||27m 49s||26m 54s||27m 59s | ||
| |} | |} | ||
| + | =4= | ||
| genomeSize=3720000 | genomeSize=3720000 | ||
| {| {{table}} border="1" | {| {{table}} border="1" | ||
| Line 505: | |||
| | align="left" style="background:#f0f0f0;"|''' Running Time '''||33m 1s||17m 3s||17m 19s||16m 9s||24m 53s||24m 12s||25m 13s | | align="left" style="background:#f0f0f0;"|''' Running Time '''||33m 1s||17m 3s||17m 19s||16m 9s||24m 53s||24m 12s||25m 13s | ||
| |} | |} | ||
| + | =5= | ||
| genomeSize=5580000 | genomeSize=5580000 | ||