Version Differences for PBcR
|
(→Performance)
|
(→Dataset 8 (P. heparinus DSM1279, 7 SMRT cells))
|
| Line 655: | |||
| We used all SMRT cells and randomly selected four SMRT cells three times for each, and evaluated the assemblies by QUAST against the reference genome ([ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Pedobacter_heparinus_DSM_2366_uid59111/ NC_013061]) and [[Media:gene_phep.ncbi | Ph_gene_list]]. ([http://sb.nhri.org.tw/comps/quast/Non-hybrid/PBcR_pipeline/D8/report.html more detail]) | We used all SMRT cells and randomly selected four SMRT cells three times for each, and evaluated the assemblies by QUAST against the reference genome ([ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Pedobacter_heparinus_DSM_2366_uid59111/ NC_013061]) and [[Media:gene_phep.ncbi | Ph_gene_list]]. ([http://sb.nhri.org.tw/comps/quast/Non-hybrid/PBcR_pipeline/D8/report.html more detail]) | ||
| ==Performance== | ==Performance== | ||
| - | without genomeSize | ||
| + | =0= | ||
| + | without genomeSize | ||
| {| {{table}} border="1" | {| {{table}} border="1" | ||
| | align="center" style="background:#f0f0f0;"|'''Statistics without reference ''' | | align="center" style="background:#f0f0f0;"|'''Statistics without reference ''' | ||
| Line 700: | |||
| + | =1= | ||
| genomeSize= 5170000 bp | genomeSize= 5170000 bp | ||
| Line 746: | |||
| [[Media: sca_d8_summary.pdf | '''Misassemblies''']] for Adobe reader. | [[Media: sca_d8_summary.pdf | '''Misassemblies''']] for Adobe reader. | ||
| + | =2= | ||
| genomeSize= 4653000 bp | genomeSize= 4653000 bp | ||
| Line 791: | |||
| [[Media: sca_d8_summary.pdf | '''Misassemblies''']] for Adobe reader. | [[Media: sca_d8_summary.pdf | '''Misassemblies''']] for Adobe reader. | ||
| + | =3= | ||
| genomeSize= 5687000 bp | genomeSize= 5687000 bp | ||
| Line 836: | |||
| [[Media: sca_d8_summary.pdf | '''Misassemblies''']] for Adobe reader. | [[Media: sca_d8_summary.pdf | '''Misassemblies''']] for Adobe reader. | ||
| + | =4= | ||
| genomeSize = 4136000 bp | genomeSize = 4136000 bp | ||
| Line 881: | |||
| [[Media: sca_d8_summary.pdf | '''Misassemblies''']] for Adobe reader. | [[Media: sca_d8_summary.pdf | '''Misassemblies''']] for Adobe reader. | ||
| + | =5= | ||
| genomeSize= 6204000 bp | genomeSize= 6204000 bp | ||