(→higher coverage bias)
|
(→higher coverage bias)
|
Line 572: | |||
[[File:d6_cov.png]] <br> | [[File:d6_cov.png]] <br> | ||
{| {{table}} border="1" | {| {{table}} border="1" | ||
- | | align="center" style="background:#f0f0f0;"|'''Filtered_four.fastq (Genome size: 4.65Mb)''' | + | | align="center" style="background:#f0f0f0;"|'''Filtered_four.fastq (Genome size: 4.65Mb)''' |
- | |- | + | |- |
- | | seqs amount:187921 | + | | seqs amount:187921 |
- | |- | + | |- |
- | | seq avg len:3190.512705 | + | | seq avg len:3190.512705 |
- | |- | + | |- |
- | | total:599.56 Mb | + | | total:599.56 Mb |
- | |- | + | |- |
- | | depth: 128.94X | + | | depth: 128.94X |
- | |} | + | |} |
=Dataset 7, (''M. ruber'' DSM1279, 4 SMRT cells)= | =Dataset 7, (''M. ruber'' DSM1279, 4 SMRT cells)= | ||
We used all SMRT cells to do assembly and evaluated the assemblies by QUAST against the reference genome ([ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Meiothermus_ruber_DSM_1279_uid46661/ NC_013946]) and [[Media:gene_mruber.ncbi | Mr_gene_list]]. ([http://sb.nhri.org.tw/comps/quast/Non-hybrid/PBcR_pipeline/D7/report.html more detail]) | We used all SMRT cells to do assembly and evaluated the assemblies by QUAST against the reference genome ([ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Meiothermus_ruber_DSM_1279_uid46661/ NC_013946]) and [[Media:gene_mruber.ncbi | Mr_gene_list]]. ([http://sb.nhri.org.tw/comps/quast/Non-hybrid/PBcR_pipeline/D7/report.html more detail]) |