Version Differences for PBcR
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(→Dataset 7, (M. ruber DSM1279, 4 SMRT cells))
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(→Dataset 8 (P. heparinus DSM1279, 7 SMRT cells))
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| Line 704: | |||
| =Dataset 8 (''P. heparinus'' DSM1279, 7 SMRT cells)= | =Dataset 8 (''P. heparinus'' DSM1279, 7 SMRT cells)= | ||
| - | We used all SMRT cells and randomly selected four SMRT cells three times for each, and evaluated the assemblies by QUAST against the reference genome ([ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Pedobacter_heparinus_DSM_2366_uid59111/ NC_013061]) and [[Media:gene_phep.ncbi | Ph_gene_list]]. ([http://sb.nhri.org.tw/comps/quast/Non-hybrid/PBcR_pipeline/D8/report.html more detail]) | + | We used all SMRT cells and randomly selected four SMRT cells three times for each, and evaluated the assemblies by QUAST against the reference genome ([ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Pedobacter_heparinus_DSM_2366_uid59111/ NC_013061]) and [[Media:gene_phep.ncbi | Ph_gene_list]]. |
| PBcR -pbCNS -length 500 -partitions 200 -l phep -s pacbio.spec -fastq filtered_subreads.fastq | PBcR -pbCNS -length 500 -partitions 200 -l phep -s pacbio.spec -fastq filtered_subreads.fastq | ||