Version Differences for PBcR pipeline
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(→Performance)
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(→Dataset 5 (E. coli K-12 MG1655, 17 SMRT cells))
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| Line 22: | |||
| runCA -p asm -d asm -s asm.spec 25X_Clr.frg | runCA -p asm -d asm -s asm.spec 25X_Clr.frg | ||
| =Dataset 5 (''E. coli'' K-12 MG1655, 17 SMRT cells)= | =Dataset 5 (''E. coli'' K-12 MG1655, 17 SMRT cells)= | ||
| - | We used all SMRT cells and randomly selected four, six and eight SMRT cells three times for each, and evaluated the assemblies by QUAST against the reference genome ([ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_K_12_substr__MG1655_uid57779/ NC_000913]) and [[Media: Ec_gene_result.ncbi | Ec_gene_list]]. ([http://sb.nhri.org.tw/comps/quast/SCA/D5/report.html more detail]) | + | We used all SMRT cells and randomly selected four, six and eight SMRT cells three times for each, and evaluated the assemblies by QUAST against the reference genome ([ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_K_12_substr__MG1655_uid57779/ NC_000913]) and [[Media: Ec_gene_result.ncbi | Ec_gene_list]]. ([http://sb.nhri.org.tw/comps/quast/Non-hybrid/PBcR_pipeline/D5/report.html more detail]) |
| ==Performance== | ==Performance== | ||