(→Dataset 8 (P. heparinus DSM1279, 7 SMRT cells))
|
(→Dataset 9 (E. coli K-12, P4-C2 chemistry, 20 Kbp, 1 SMRT cell))
|
Line 287: | |||
|Total||30hr 59m | |Total||30hr 59m | ||
|} | |} | ||
+ | ==Performance== | ||
+ | {| {{table}} border="1" | ||
+ | | align="center" style="background:#f0f0f0;"|'''Statistics without reference ''' | ||
+ | | align="center" style="background:#f0f0f0;"|'''All Data''' | ||
+ | |- | ||
+ | |# contigs||[[Media:pbcr_pipeline_d9.fa |2]] | ||
+ | |- | ||
+ | |Largest contig||4 644 060 | ||
+ | |- | ||
+ | |Total length||4 652 830 | ||
+ | |- | ||
+ | |N50||4 644 060 | ||
+ | |- | ||
+ | | style="background:#f0f0f0;"| [[Media: pbcr_pipeline_d9.pdf | '''Misassemblies''']]|| | ||
+ | |- | ||
+ | |# misassemblies||8 | ||
+ | |- | ||
+ | |Misassembled contigs length ||4 644 060 | ||
+ | |- | ||
+ | | style="background:#f0f0f0;"| '''Mismatches'''|| | ||
+ | |- | ||
+ | |# mismatches per 100kbp||0.17 | ||
+ | |- | ||
+ | |# indels per 100kbp||31.7 | ||
+ | |- | ||
+ | |# N's per 100kbp ||0 | ||
+ | |- | ||
+ | | style="background:#f0f0f0;"| '''Genome Statistics'''|| | ||
+ | |- | ||
+ | |Genome fraction(%) ||100 | ||
+ | |- | ||
+ | |Duplication ratio ||1.003 | ||
+ | |- | ||
+ | |# genes ||4494+3 part | ||
+ | |- | ||
+ | |NGA50 ||3 025 484 | ||
+ | |- | ||
+ | | style="background:#f0f0f0;"| '''Genome Statistics'''|| | ||
+ | |- | ||
+ | |Running time|| 23m | ||
+ | |} |