Version Differences for PBcR pipeline

(Dataset 8 (P. heparinus DSM1279, 7 SMRT cells))
(Dataset 9 (E. coli K-12, P4-C2 chemistry, 20 Kbp, 1 SMRT cell))
Line 287:
  |Total||30hr 59m    |Total||30hr 59m 
  |}    |} 
       
       
    + ==Performance==  
       
    + {| {{table}} border="1"  
    + | align="center" style="background:#f0f0f0;"|'''Statistics without reference '''  
    + | align="center" style="background:#f0f0f0;"|'''All Data'''  
       
    + |-  
    + |# contigs||[[Media:pbcr_pipeline_d9.fa |2]]  
    + |-  
    + |Largest contig||4 644 060  
    + |-  
    + |Total length||4 652 830  
    + |-  
    + |N50||4 644 060  
    + |-  
    + | style="background:#f0f0f0;"| [[Media: pbcr_pipeline_d9.pdf | '''Misassemblies''']]||  
    + |-  
    + |# misassemblies||8  
    + |-  
    + |Misassembled contigs length ||4 644 060  
    + |-  
    + | style="background:#f0f0f0;"| '''Mismatches'''||  
    + |-  
    + |# mismatches per 100kbp||0.17  
    + |-  
    + |# indels per 100kbp||31.7  
    + |-  
    + |# N's per 100kbp ||0  
    + |-  
    + | style="background:#f0f0f0;"| '''Genome Statistics'''||  
    + |-  
    + |Genome fraction(%) ||100  
    + |-  
    + |Duplication ratio ||1.003  
    + |-  
    + |# genes ||4494+3 part  
    + |-  
    + |NGA50 ||3 025 484  
    + |-  
    + | style="background:#f0f0f0;"| '''Genome Statistics'''||  
    + |-  
    + |Running time|| 23m  
    + |}