Version Differences for PBcR pipeline

(→Dataset 9 (E. coli K-12, P4-C2 chemistry, 20 Kbp, 1 SMRT cell))
Line 287:
  |Total||30hr 59m    |Total||30hr 59m 
  |}    |} 
       
       
       
- We used the latest version of PBcR pipeline ([http://sourceforge.net/projects/wgs-assembler/files/wgs-assembler/wgs-8.2beta/ 8.2beta]). [http://sb.nhri.org.tw/comps/quast/Non-hybrid/PBcR_pipeline/D9_PBcR8.2/report.html more detail]      
       
- PBcR -pbCNS -length 500 -partitions 200 -l p4c2 -s pacbio.spec -fastq filtered_subreads.fastq genomeSize=4650000      
       
- ==wgs-8.2beta Performance==      
       
- {| {{table}} border="1"      
- | align="center" style="background:#f0f0f0;"|'''Statistics without reference '''      
- | align="center" style="background:#f0f0f0;"|'''All Data'''      
       
- |-      
- |# contigs||[[Media:pbcr_pipeline_d9.fa |2]]      
- |-      
- |Largest contig||4 644 060      
- |-      
- |Total length||4 652 830      
- |-      
- |N50||4 644 060      
- |-      
- | style="background:#f0f0f0;"| [[Media: pbcr_pipeline_d9.pdf | '''Misassemblies''']]||      
- |-      
- |# misassemblies||8      
- |-      
- |Misassembled contigs length ||4 644 060      
- |-      
- | style="background:#f0f0f0;"| '''Mismatches'''||      
- |-      
- |# mismatches per 100kbp||0.17      
- |-      
- |# indels per 100kbp||31.7      
- |-      
- |# N's per 100kbp ||0      
- |-      
- | style="background:#f0f0f0;"| '''Genome Statistics'''||      
- |-      
- |Genome fraction(%) ||100      
- |-      
- |Duplication ratio ||1.003      
- |-      
- |# genes ||4494+3 part      
- |-      
- |NGA50 ||3 025 484      
- |-      
- | style="background:#f0f0f0;"| '''Running time'''||      
- |-      
- |Running time|| 23m      
- |}