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In running pacBioToCA, we found that the amount of PBcR was influenced by the parameter of genomeSize. |
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In running pacBioToCA, we found that the amount of PBcR was influenced by the parameter of genomeSize. |
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Short reads: 100X, long reads: 200X, w/wo genome size
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pacBioToCA -l viaMiseq -s pacbio.spec -t 10 -partitions 200 fastqFile=filtered_subreads.200X.fastq.bz2 miseq.100X.frg.bz2
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pacBioToCA -l viaMiseq -s pacbio.spec -t 10 -partitions 200 fastqFile=filtered_subreads.200X.fastq.bz2 genomeSize=4650000 miseq.100X.frg.bz2
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Short reads: 118X, long reads: one ~ four SMRT cell reads
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