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ALLPATHS-LG
E. coli
R. sphaeroides
S. pneumoniae
PBcR pipeline
Data
Read Depths
pacBioToCA
runCA
wgs-8.2
SPAdes
E. coli
R. sphaeroides
S. pneumoniae
Hybrid
SSPACE-longread
Result
Non-hybrid assembly
Pacbio Data
HGAP
PBcR pipeline
wgs-8.2
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Version Differences for PacBioToCA
Revision as of 16 August 2013 00:34
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Revision as of 20 August 2013 20:31
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runCA unitigger=bogart merSize=14 ovlMinLen= <ovl value> utgErrorRate=0.015 utgGraphErrorRate=0.015 utgGraphErrorLimit=0 utgMergeErrorRate=0.03 utgMergeErrorLimit=0 -p asm -d asm viaMiseq.frg