| |
The <ovl value> parameter was set to approximately 40% of your average corrected sequence lengths ([http://sourceforge.net/apps/mediawiki/wgs-assembler/index.php?title=PacBioToCA ref]). ''As a general rule, if the average corrected length is less than 2.5Kbp, set it to 1000, if it is less than 3Kbp, set it to 1500, if it is less than 5.5Kbp, set it to 2000, if it is greater than 5.5Kbp, set it to 2500, and if it is greater than 6.5Kbp, set it to 3000.'' |
|
The <ovl value> parameter was set to approximately 40% of your average corrected sequence lengths ([http://sourceforge.net/apps/mediawiki/wgs-assembler/index.php?title=PacBioToCA ref]). ''As a general rule, if the average corrected length is less than 2.5Kbp, set it to 1000, if it is less than 3Kbp, set it to 1500, if it is less than 5.5Kbp, set it to 2000, if it is greater than 5.5Kbp, set it to 2500, and if it is greater than 6.5Kbp, set it to 3000.'' |
| |
| align="center" style="background:#f0f0f0;"|'''Statistics without reference''' |
|
| align="center" style="background:#f0f0f0;"|'''Statistics without reference''' |
| |
| align="center" style="background:#f0f0f0;"|'''192221_asm.ctg''' |
|
| align="center" style="background:#f0f0f0;"|'''192221_asm.ctg''' |
| |
| N50||245130||484760||462620||508833||544950 |
|
| N50||245130||484760||462620||508833||544950 |
| - |
| Misassemblies||||||||||
|
+ |
| style="background:#f0f0f0;"| Misassemblies||||||||||
|
| |
| # misassemblies||19||26||21||33||36 |
|
| # misassemblies||19||26||21||33||36 |
| |
| # N's per 100 kbp||0.21||0.12||0.08||0.15||0.1 |
|
| # N's per 100 kbp||0.21||0.12||0.08||0.15||0.1 |
| - |
| Genome statistics||||||||||
|
+ |
| style="background:#f0f0f0;"| Genome statistics||||||||||
|
| |
| Genome fraction (%)||99.989||99.972||100||100||100 |
|
| Genome fraction (%)||99.989||99.972||100||100||100 |
