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Here, we adjust Celera Assembler parameters to make overlap detection more stringent ([http://sourceforge.net/apps/mediawiki/wgs-assembler/index.php?title=PacBioToCA ref]).
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Here, we adjusted Celera Assembler parameters to make overlap detection more stringent ([http://sourceforge.net/apps/mediawiki/wgs-assembler/index.php?title=PacBioToCA ref]).
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runCA unitigger=bogart merSize=14 ovlMinLen= <ovl value> utgErrorRate=0.015 utgGraphErrorRate=0.015 utgGraphErrorLimit=0 utgMergeErrorRate=0.03 utgMergeErrorLimit=0 -p asm -d asm viaMiseq.frg |
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runCA unitigger=bogart merSize=14 ovlMinLen= <ovl value> utgErrorRate=0.015 utgGraphErrorRate=0.015 utgGraphErrorLimit=0 utgMergeErrorRate=0.03 utgMergeErrorLimit=0 -p asm -d asm viaMiseq.frg |