Version Differences for Pacbio Data
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(→Randomly Selected Three SMRT cells)
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(→Dataset 7, M. ruber DSM1279, 4 SMRT cells)
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| Line 394: | |||
| ===First Set=== | ===First Set=== | ||
| - | m120803_041200_42141_c100388772550000001523034210251235_s1_p0.bas.h5 <br> | ||
| + | m120803_022519_42141_c100388772550000001523034210251234_s1_p0.bas.h5 <br> | ||
| m120803_055858_42141_c100388772550000001523034210251236_s1_p0.bas.h5 <br> | m120803_055858_42141_c100388772550000001523034210251236_s1_p0.bas.h5 <br> | ||
| m120803_074648_42141_c100388772550000001523034210251237_s1_p0.bas.h5 <br> | m120803_074648_42141_c100388772550000001523034210251237_s1_p0.bas.h5 <br> | ||
| Line 400: | |||
| + | {| {{table}} border="1" | ||
| + | | align="center" style="background:#f0f0f0;"|'''filtered_subreads.fastq (genome size: 3.1Mb)''' | ||
| + | |- | ||
| + | | seqs amount:120660 | ||
| + | |- | ||
| + | | seq avg len:2430.878734 | ||
| + | |- | ||
| + | | total:293.31 Mb | ||
| + | |- | ||
| + | | depth: 94.62X | ||
| + | |} | ||
| ===Second Set=== | ===Second Set=== | ||
| m120803_022519_42141_c100388772550000001523034210251234_s1_p0.bas.h5 <br> | m120803_022519_42141_c100388772550000001523034210251234_s1_p0.bas.h5 <br> | ||
| - | m120803_055858_42141_c100388772550000001523034210251236_s1_p0.bas.h5 <br> | + | m120803_041200_42141_c100388772550000001523034210251235_s1_p0.bas.h5 <br> |
| m120803_074648_42141_c100388772550000001523034210251237_s1_p0.bas.h5 <br> | m120803_074648_42141_c100388772550000001523034210251237_s1_p0.bas.h5 <br> | ||
| + | {| {{table}} border="1" | ||
| + | | align="center" style="background:#f0f0f0;"|'''filtered_subreads.fastq (genome size: 3.1Mb)''' | ||
| + | |- | ||
| + | | seqs amount:120106 | ||
| + | |- | ||
| + | | seq avg len:2444.419554 | ||
| + | |- | ||
| + | | total:293.59 Mb | ||
| + | |- | ||
| + | | depth: 94.71X | ||
| + | |} | ||
| ===Third Set=== | ===Third Set=== | ||
| m120803_022519_42141_c100388772550000001523034210251234_s1_p0.bas.h5 <br> | m120803_022519_42141_c100388772550000001523034210251234_s1_p0.bas.h5 <br> | ||
| m120803_041200_42141_c100388772550000001523034210251235_s1_p0.bas.h5 <br> | m120803_041200_42141_c100388772550000001523034210251235_s1_p0.bas.h5 <br> | ||
| - | m120803_074648_42141_c100388772550000001523034210251237_s1_p0.bas.h5 <br> | + | m120803_055858_42141_c100388772550000001523034210251236_s1_p0.bas.h5 <br> |
| + | {| {{table}} border="1" | ||
| + | | align="center" style="background:#f0f0f0;"|'''filtered_subreads.fastq (genome size: 3.1Mb)''' | ||
| + | |- | ||
| + | | seqs amount:114561 | ||
| + | |- | ||
| + | | seq avg len:2483.7344 | ||
| + | |- | ||
| + | | total:284.54 Mb | ||
| + | |- | ||
| + | | depth: 91.79X | ||
| + | |} | ||
| ===Fourth Set=== | ===Fourth Set=== | ||
| - | m120803_022519_42141_c100388772550000001523034210251234_s1_p0.bas.h5 <br> | ||
| m120803_041200_42141_c100388772550000001523034210251235_s1_p0.bas.h5 <br> | m120803_041200_42141_c100388772550000001523034210251235_s1_p0.bas.h5 <br> | ||
| m120803_055858_42141_c100388772550000001523034210251236_s1_p0.bas.h5 <br> | m120803_055858_42141_c100388772550000001523034210251236_s1_p0.bas.h5 <br> | ||
| + | m120803_074648_42141_c100388772550000001523034210251237_s1_p0.bas.h5 <br> | ||
| + | {| {{table}} border="1" | ||
| + | | align="center" style="background:#f0f0f0;"|'''filtered_subreads.fastq (genome size: 3.1Mb)''' | ||
| + | |- | ||
| + | | seqs amount:115193 | ||
| + | |- | ||
| + | | seq avg len:2420.581146 | ||
| + | |- | ||
| + | | total:278.83 Mb | ||
| + | |- | ||
| + | | depth: 89.95X | ||
| + | |} | ||
| = Dataset 8, ''P. heparinus'' DSM2366, 7 SMRT cells = | = Dataset 8, ''P. heparinus'' DSM2366, 7 SMRT cells = | ||
| The seven SMRT cells of Phep were downloaded from [http://files.pacb.com/software/hgap/index.html HGAP]. We used all SMRT cells and randomly selected four SMRT cells three times for each in our study. <br> | The seven SMRT cells of Phep were downloaded from [http://files.pacb.com/software/hgap/index.html HGAP]. We used all SMRT cells and randomly selected four SMRT cells three times for each in our study. <br> | ||