Version Differences for Pacbio Data
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(→All Data)
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(→Dataset 7, M. ruber DSM1279, 4 SMRT cells)
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| Line 177: | |||
| m120803_055858_42141_c100388772550000001523034210251236_s1_p0.bas.h5 <br> | m120803_055858_42141_c100388772550000001523034210251236_s1_p0.bas.h5 <br> | ||
| m120803_074648_42141_c100388772550000001523034210251237_s1_p0.bas.h5 <br> | m120803_074648_42141_c100388772550000001523034210251237_s1_p0.bas.h5 <br> | ||
| + | We have run smrtpipe.py ([https://github.com/PacificBiosciences/SMRT-Analysis/wiki/SMRT-Pipe-Reference-Guide-v2.0 SMRT analysis]) with the following params.xml to get filtered subreads of continuous long reads (CLR). | ||
| + | <param name="minLength"> | ||
| + | <value>50</value> | ||
| + | </param> | ||
| + | <param name="readScore"> | ||
| + | <value>0.75</value> | ||
| + | </param> | ||
| + | <param name="minSubReadLength"> | ||
| + | <value>50</value> | ||
| = Dataset 8, ''P. heparinus'' DSM2366, 7 SMRT cells = | = Dataset 8, ''P. heparinus'' DSM2366, 7 SMRT cells = | ||
| The seven SMRT cells of Phep were downloaded from [http://files.pacb.com/software/hgap/index.html HGAP]. We used all SMRT cells and randomly selected four SMRT cells three times for each in our study. <br> | The seven SMRT cells of Phep were downloaded from [http://files.pacb.com/software/hgap/index.html HGAP]. We used all SMRT cells and randomly selected four SMRT cells three times for each in our study. <br> | ||