Version Differences for Pacbio Data
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(→All Data)
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(→Dataset 9, E. coli P4-C2 chemistry, 20Kbp library, 1 SMRT cells)
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| Line 235: | |||
| m130404_014004_sidney_c100506902550000001823076808221337_s1_p0.2.bax.h5 <br> | m130404_014004_sidney_c100506902550000001823076808221337_s1_p0.2.bax.h5 <br> | ||
| m130404_014004_sidney_c100506902550000001823076808221337_s1_p0.3.bax.h5 <br> | m130404_014004_sidney_c100506902550000001823076808221337_s1_p0.3.bax.h5 <br> | ||
| + | We have run smrtpipe.py ([https://github.com/PacificBiosciences/SMRT-Analysis/wiki/SMRT-Pipe-Reference-Guide-v2.0 SMRT analysis]) with the following params.xml to get filtered subreads of continuous long reads (CLR). | ||
| + | <param name="minLength"> | ||
| + | <value>50</value> | ||
| + | </param> | ||
| + | <param name="readScore"> | ||
| + | <value>0.75</value> | ||
| + | </param> | ||
| + | <param name="minSubReadLength"> | ||
| + | <value>50</value> | ||