| Line 108: |
| |
| align="left" style="background:#f0f0f0;"|[[Media: Allpaths_D2.pdf | '''Misassemblies''']] |
|
| align="left" style="background:#f0f0f0;"|[[Media: Allpaths_D2.pdf | '''Misassemblies''']] |
| |
|- |
|
|- |
| - |
| # misassemblies||16||12||20||NA||19
|
+ |
| # misassemblies||3||3||4||NA||4
|
| |
|- |
|
|- |
| - |
|Misassembled contigs length ||4370092||4361060||4557570||NA||4484870
|
+ |
|Misassembled contigs length ||133056||1067239||206335||NA||196336
|
| |
|- |
|
|- |
| |
| align="left" style="background:#f0f0f0;"|'''Mismatches''' |
|
| align="left" style="background:#f0f0f0;"|'''Mismatches''' |
| Line 116: |
| - |
|# mismatches per 100kbp ||3.48||3.77||4.8||NA||6.79
|
+ |
|# mismatches per 100kbp ||3.04||3.69||4.15||NA||6.35
|
| |
|- |
|
|- |
| - |
|# indels per 100kbp ||3.52||5.13||4.87||NA||6.22
|
+ |
|# indels per 100kbp ||2.91||3.93||3.65||NA||5.48
|
| |
|- |
|
|- |
| |
|# N's per 100kbp ||0||0.09||0.13||NA||45.04 |
|
|# N's per 100kbp ||0||0.09||0.13||NA||45.04 |
| Line 122: |
| |
| align="left" style="background:#f0f0f0;"|'''Genome statistics''' |
|
| align="left" style="background:#f0f0f0;"|'''Genome statistics''' |
| |
|- |
|
|- |
| - |
| Genome fraction (%)||99.932||99.683||99.948||NA||99.85
|
+ |
| Genome fraction (%)||99.932||99.583||99.927||NA||99.834
|
| |
|- |
|
|- |
| - |
| Duplication ratio ||1.011||1.005||1.009||NA||1.004
|
+ |
| Duplication ratio ||1.001||1.001||1.002||NA||1.002
|
| |
|- |
|
|- |
| - |
| # genes||4381 + 6 part ||4369 + 10 part ||4380+ 7 part ||NA||4373 + 13 part
|
+ |
| # genes||4381 + 6 part ||4365 + 11 part ||4379+ 7 part ||NA||4372 + 14 part
|
| |
|- |
|
|- |
| - |
| NGA50 || 904505 || 2938269 || 2715665 ||NA|| 1405713
|
+ |
| NGA50 || 3188814 || 3188540 || 3188795 ||NA|| 3188333
|
| |
|- |
|
|- |
| |
| align="left" style="background:#f0f0f0;"|''' Running Time '''|| 2hr12m ||5hr 09m||1hr 49m||NA || 3hr 33m |
|
| align="left" style="background:#f0f0f0;"|''' Running Time '''|| 2hr12m ||5hr 09m||1hr 49m||NA || 3hr 33m |
| Line 157: |
| |
| align="left" style="background:#f0f0f0;"|[[Media: Allpaths_D2_nopac,pdf | '''Misassemblies''']] |
|
| align="left" style="background:#f0f0f0;"|[[Media: Allpaths_D2_nopac,pdf | '''Misassemblies''']] |
| |
|- |
|
|- |
| - |
| # misassemblies||9||6||17||251||25
|
+ |
| # misassemblies||6||4||10||249||16
|
| |
|- |
|
|- |
| - |
|Misassembled contigs length ||4205887||4147900||2637662||3829308||3929579
|
+ |
|Misassembled contigs length ||4163443||4147900||2637662||3829308||3815869
|
| |
|- |
|
|- |
| |
| align="left" style="background:#f0f0f0;"|'''Mismatches''' |
|
| align="left" style="background:#f0f0f0;"|'''Mismatches''' |
| Line 165: |
| - |
|# mismatches per 100kbp ||5.81||4.23||7.49||21.47||7.33
|
+ |
|# mismatches per 100kbp ||5.81||4.23||7.41||21.37||7.02
|
| |
|- |
|
|- |
| - |
|# indels per 100kbp ||5.64||3.57||4.72||7.45||8.15
|
+ |
|# indels per 100kbp ||3.65||3.57||4.5||4.88||4.99
|
| |
|- |
|
|- |
| |
|# N's per 100kbp ||120.74||149.31||197.84||227311||1572.6 |
|
|# N's per 100kbp ||120.74||149.31||197.84||227311||1572.6 |
| Line 171: |
| |
| align="left" style="background:#f0f0f0;"|'''Genome statistics''' |
|
| align="left" style="background:#f0f0f0;"|'''Genome statistics''' |
| |
|- |
|
|- |
| - |
| Genome fraction (%)||99.45||98.789||99.468||64.653||98.655
|
+ |
| Genome fraction (%)||99.417||98.669||99.437||64.402||98.348
|
| |
|- |
|
|- |
| - |
| Duplication ratio ||1.018||1.022||1.015||1.373||1.027
|
+ |
| Duplication ratio ||1.004||1.009||1.01||1.38||1.022
|
| |
|- |
|
|- |
| - |
| # genes||4348 + 27 part ||4313 + 47 part ||4343 + 31 part ||2176+ 1195part ||4212 + 162 part
|
+ |
| # genes||4345 + 30 part ||4308 + 47 part ||4341 + 31 part ||2176+ 1205part ||4183 + 185 part
|
| |
|- |
|
|- |
| - |
| NGA50 ||3182258||3180491||1487141||10117||546230
|
+ |
| NGA50 ||3182258||3180491||1486855||9975||511933
|
| |
|- |
|
|- |
| |
| align="left" style="background:#f0f0f0;"|''' Running Time '''|| 41m ||1hr 01m || 36m|| 19m || 33m |
|
| align="left" style="background:#f0f0f0;"|''' Running Time '''|| 41m ||1hr 01m || 36m|| 19m || 33m |
