Version Differences for R. sphaeroides
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(→Self-fraction data)
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(→100X fragment reads)
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| Line 42: | |||
| | tee prepare.out | | tee prepare.out | ||
| ==100X fragment reads== | ==100X fragment reads== | ||
| - | We randomly selected 100X coverage data from fragment library of raw data by prepare.sh. | + | We randomly selected 100X coverage data from fragment library and 100X coverage data from jumping library by prepare.sh. |
| - | Fraction = 100/443.12 = 0.226 <br> | ||
| PrepareAllPathsInputs.pl\ | PrepareAllPathsInputs.pl\ | ||
| - | |||
| - | |||
| - | FRAG_FRAC=0.226\ | + | GENOME_SIZE=4600000\ |
| + | FRAG_COVERAGE=100\ | ||
| + | JUMP_COVETAGE=100\ | ||
| IN_GROUPS_CSV=in_groups.csv\ | IN_GROUPS_CSV=in_groups.csv\ | ||
| IN_LIBS_CSV=in_libs.csv\ | IN_LIBS_CSV=in_libs.csv\ | ||