Version Differences for R. sphaeroides
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(→100X fragment reads)
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| Line 41: | |||
| OVERWRITE=True\ | OVERWRITE=True\ | ||
| | tee prepare.out | | tee prepare.out | ||
| + | ==50X fragment reads== | ||
| + | We randomly selected 50X coverage data from fragment library and 50X coverage data from jumping library by prepare.sh. | ||
| + | PrepareAllPathsInputs.pl\ | ||
| + | DATA_DIR=$PWD/test.genome/data\ | ||
| + | PLOIDY=1\ | ||
| + | GENOME_SIZE=4600000\ | ||
| + | FRAG_COVERAGE=50\ | ||
| + | JUMP_COVERAGE=50\ | ||
| + | IN_GROUPS_CSV=in_groups.csv\ | ||
| + | IN_LIBS_CSV=in_libs.csv\ | ||
| + | OVERWRITE=True\ | ||
| + | | tee prepare.out | ||
| ==100X fragment reads== | ==100X fragment reads== | ||
| We randomly selected 100X coverage data from fragment library and 100X coverage data from jumping library by prepare.sh. | We randomly selected 100X coverage data from fragment library and 100X coverage data from jumping library by prepare.sh. | ||