Version Differences for R. sphaeroides

(→Evaluation)
(→Evaluation)
Line 95:
       
  |-    |- 
- | # contigs||13||11||10||11   + | # contigs||11||13||10||11  
  |-    |- 
- | Largest contig||3188540||3188818||3188847||3188802   + | Largest contig||3188818||3188540||3188847||3188802  
  |-    |- 
- | Total length||4588701||4601792||4609235||4601762   + | Total length||4601792||4588701||4609235||4601762  
  |-    |- 
- | N50||3188540||3188818||3188847||3188802   + | N50||3188818||3188540||3188847||3188802  
  |-    |- 
  | align="left" style="background:#f0f0f0;"|'''Misassemblies'''    | align="left" style="background:#f0f0f0;"|'''Misassemblies''' 
Line 107:
- | # misassemblies||12||16||20||19   + | # misassemblies||16||12||20||19  
  |-    |- 
- |Misassembled contigs length ||4361060||4370092||4557570||4484253   + |Misassembled contigs length ||4370092||4361060||4557570||4484253  
  |-    |- 
  | align="left" style="background:#f0f0f0;"|'''Mismatches'''    | align="left" style="background:#f0f0f0;"|'''Mismatches''' 
Line 113:
- |# mismatches per 100kbp ||3.77||3.48||4.8||6.43   + |# mismatches per 100kbp ||3.48||3.77||4.8||6.43  
  |-    |- 
- |# indels per 100kbp ||5.13||3.52||4.87||5.61   + |# indels per 100kbp ||3.52||5.13||4.87||5.61  
  |-    |- 
- |# N's per 100kbp ||0.09||0||0.13||0.07   + |# N's per 100kbp ||0||0.09||0.13||0.07  
  |-    |- 
  | align="left" style="background:#f0f0f0;"|'''Genome statistics'''    | align="left" style="background:#f0f0f0;"|'''Genome statistics''' 
Line 121:
- | Genome fraction (%)||99.683||99.932||99.948||99.945   + | Genome fraction (%)||99.932||99.683||99.948||99.945  
  |-    |- 
- | Duplication ratio ||1.005||1.011||1.009||1.007   + | Duplication ratio ||1.011||1.005||1.009||1.007  
  |-    |- 
- | # genes||4369 + 10 part　||4381 + 6 part　||4380+ 7 part　||4378 + 8 part   + | # genes||4381 + 6 part　||4369 + 10 part　||4380+ 7 part　||4378 + 8 part  
  |-    |- 
- | NGA50 || 2938269 || 904505 || 2715665 || 3170709   + | NGA50 || 904505 || 2938269 || 2715665 || 3170709  
  |-    |- 
  |}    |} 
Line 133:
  {| {{table}} border="１"    {| {{table}} border="１" 
  | align="left" style="background:#f0f0f0;"|'''Basic statistics'''    | align="left" style="background:#f0f0f0;"|'''Basic statistics''' 
    + | align="left" style="background:#f0f0f0;"|'''Published Data'''  
  | align="left" style="background:#f0f0f0;"|'''Raw Data'''    | align="left" style="background:#f0f0f0;"|'''Raw Data''' 
- | align="left" style="background:#f0f0f0;"|'''Website Data'''   + | align="left" style="background:#f0f0f0;"|'''Fractional Data'''  
- | align="left" style="background:#f0f0f0;"|'''Self-fraction Data'''   + | align="left" style="background:#f0f0f0;"|'''50X Coverage'''  
- | align="left" style="background:#f0f0f0;"|'''100 Coverage'''   + | align="left" style="background:#f0f0f0;"|'''100X Coverage'''  
       
  |-    |- 
- | # contigs||57||31||32||26   + | # contigs||31||57||32||26  
  |-    |- 
- | Largest contig||3186675||3188995||1674993||3190277   + | Largest contig||3188995||3186675||1674993||3190277  
  |-    |- 
- | Total length||4583750||4592561||4620837||4607723   + | Total length||4592561||4583750||4620837||4607723  
  |-    |- 
- | N50||3186675||3188995||1492665||3190277   + | N50||3188995||3186675||1492665||3190277  
  |-    |- 
  | align="left" style="background:#f0f0f0;"|'''Misassemblies'''    | align="left" style="background:#f0f0f0;"|'''Misassemblies''' 
Line 151:
- | # misassemblies||6||9||17||27   + | # misassemblies||9||6||17||27  
  |-    |- 
- |Misassembled contigs length ||4147900||4205887||2637662||4422750   + |Misassembled contigs length ||4205887||4147900||2637662||4422750  
  |-    |- 
  | align="left" style="background:#f0f0f0;"|'''Mismatches'''    | align="left" style="background:#f0f0f0;"|'''Mismatches''' 
Line 157:
- |# mismatches per 100kbp ||4.23||5.81||7.49||10.76   + |# mismatches per 100kbp ||5.81||4.23||7.49||10.76  
  |-    |- 
- |# indels per 100kbp ||3.57||5.64||4.72||8.94   + |# indels per 100kbp ||5.64||3.57||4.72||8.94  
  |-    |- 
- |# N's per 100kbp ||149.31||120.74||197.84||812.74   + |# N's per 100kbp ||120.74||149.31||197.84||812.74  
  |-    |- 
  | align="left" style="background:#f0f0f0;"|'''Genome statistics'''    | align="left" style="background:#f0f0f0;"|'''Genome statistics''' 
Line 165:
- | Genome fraction (%)||98.789||99.45||99.468||98.896   + | Genome fraction (%)||99.45||98.789||99.468||98.896  
  |-    |- 
- | Duplication ratio ||1.022||1.018||1.015||1.02   + | Duplication ratio ||1.018||1.022||1.015||1.02  
  |-    |- 
- | # genes||4313 + 47 part　||4348 + 27 part　||4343 + 31 part　||4266 + 101 part   + | # genes||4348 + 27 part　||4313 + 47 part　||4343 + 31 part　||4266 + 101 part  
  |-    |- 
- | NGA50 ||3180491||3182258||1487141||546353   + | NGA50 ||3182258||3180491||1487141||546353  
  |-    |- 
  |}    |}