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ALLPATHS-LG
E. coli
R. sphaeroides
S. pneumoniae
PBcR pipeline
Data
Read Depths
pacBioToCA
runCA
wgs-8.2
SPAdes
E. coli
R. sphaeroides
S. pneumoniae
Hybrid
SSPACE-longread
Result
Non-hybrid assembly
Pacbio Data
HGAP
PBcR pipeline
wgs-8.2
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Version Differences for R. sphaeroides
Revision as of 21 January 2014 21:26
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Evaluation
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Revision as of 21 January 2014 21:42
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50X fragment reads
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Line 49:
DATA_DIR=$PWD/test.genome/data\
DATA_DIR=$PWD/test.genome/data\
PLOIDY=1\
PLOIDY=1\
-
GENOME_SIZE=46
0
0000\
+
GENOME_SIZE=46
1
0000\
FRAG_COVERAGE=50\
FRAG_COVERAGE=50\
JUMP_COVERAGE=50\
JUMP_COVERAGE=50\