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Dataset 2, Rhodobacter sphaeroides strain 2.4.1. The R. sphaeroides 2.4.1 consists of two circular chromosomes of 3,188,609 bp and 943,016 bp, and five plasmids of 114,045 bp, 114,178 bp, 105,284 bp, 100,828 bp and 37,100 bp in length, respectively. Please refer to [http://www.ncbi.nlm.nih.gov/pubmed/22829535 ''Finished bacterial genomes from shotgun sequence data.'' Genome Research 2012] for detail.
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Dataset 2, Rhodobacter sphaeroides strain 2.4.1. This dataset includes three libraries: fragment, jump and long reads. The R. sphaeroides 2.4.1 consists of two circular chromosomes of 3,188,609 bp and 943,016 bp, and five plasmids of 114,045 bp, 114,178 bp, 105,284 bp, 100,828 bp and 37,100 bp in length, respectively. Please refer to [http://www.ncbi.nlm.nih.gov/pubmed/22829535 ''Finished bacterial genomes from shotgun sequence data.'' Genome Research 2012] for detail.
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==Published data==
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==Website data==
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The Illumina and pacbio data were downloaded from ALLPATHS-LG website : [ftp://ftp.broadinstitute.org/pub/papers/assembly/Ribeiro2012/data/rhody_data.tar.gz rhody_data.tar.gz] <br> |
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The Illumina and pacbio data were downloaded from ALLPATHS-LG website : [ftp://ftp.broadinstitute.org/pub/papers/assembly/Ribeiro2012/data/rhody_data.tar.gz rhody_data.tar.gz] <br> |
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Reads amount : 4354215 X2 <br> |
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Reads amount : 4354215 X2 <br> |
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Insert size : 180bp <br> |
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Insert size : 180bp <br> |
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Coverage : 170.16X <br>
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Coverage : 191.0X <br>
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'''Jumping library''' <br> |
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'''Jumping library''' <br> |
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Reads length : 101bp <br> |
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Reads length : 101bp <br> |
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Reads amount : 1974031 X2 <br> |
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Reads amount : 1974031 X2 <br> |
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Insert size : 3000bp <br> |
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Insert size : 3000bp <br> |
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'''PacBio reads''' <br> |
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'''PacBio reads''' <br> |
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Reads average length : 1031.19bp <br> |
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Reads average length : 1031.19bp <br> |
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Coverage : 446.44X <br>
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Coverage : 446.4X <br>
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==Raw data== |
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==Raw data== |
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The raw data of website data from Sequence Read Archive (SRA)
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The raw Illumina data were obtained from Sequence Read Archive (SRA).
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'''Fragment library''' <br> |
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'''Fragment library''' <br> |
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Accession : [http://www.ncbi.nlm.nih.gov/sra/SRX000946 SRX000946] <br>
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Accession : [http://www.ncbi.nlm.nih.gov/sra/SRX000946 SRR125492] <br>
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Reads length : 101bp <br> |
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Reads length : 101bp <br> |
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Reads amount : 11339101 X2 <br> |
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Reads amount : 11339101 X2 <br> |
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Coverage : 433.12X <br>
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Coverage : 497.3X <br>
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'''Jumping library'''<br> |
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'''Jumping library'''<br> |
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Accession : [http://www.ncbi.nlm.nih.gov/sra/SRX111018 SRX111018] <br>
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Accession : [http://www.ncbi.nlm.nih.gov/sra/SRX111018 SRR388672] <br>
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'''PacBio reads''' <br>
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Accession : [http://www.ncbi.nlm.nih.gov/sra/SRX109847 SRX109847](SRR386702), [http://www.ncbi.nlm.nih.gov/sra/SRX109812 SRX109812],[http://www.ncbi.nlm.nih.gov/sra/SRX109830 SRX109830],[http://www.ncbi.nlm.nih.gov/sra/SRX109818 SRX109818](SRR386746),[http://www.ncbi.nlm.nih.gov/sra/SRX111329 SRX111329]
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==Fractional data== |
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==Fractional data== |
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We randomly selected the same fraction as website data from fragment library of raw data by prepare.sh. |
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We randomly selected the same fraction as website data from fragment library of raw data by prepare.sh. |
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{| {{table}} border="１" |
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{| {{table}} border="１" |
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| align="left" style="background:#f0f0f0;"|'''Basic statistics''' |
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| align="left" style="background:#f0f0f0;"|'''Basic statistics''' |
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| align="left" style="background:#f0f0f0;"|'''Published Data'''
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| align="left" style="background:#f0f0f0;"|'''Website Data'''
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| align="left" style="background:#f0f0f0;"|'''Raw Data''' |
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| align="left" style="background:#f0f0f0;"|'''Raw Data''' |
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| align="left" style="background:#f0f0f0;"|'''Fractional Data''' |
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| align="left" style="background:#f0f0f0;"|'''Fractional Data''' |
