Version Differences for Read Depths

(→Hybrid error correction)
(→Performance)
Line 18:
  == Performance ==    == Performance == 
       
    + {| {{table}}  
    + | m120208_071634.fastq||m120228_192221||m120228_210845||Filtered_two.fastq||Filtered_three.fastq||Filtered_four.fastq  
    + |-  
    + | seqs amount:37077||seqs amount:38542||seqs amount:44794||seqs amount:77117||seqs amount:113284||seqs amount:136333  
    + |-  
    + | seq avg len:2023.338161||seq avg len:2322.679985||seq avg len:2334.414140||seq avg len:2184.208709||seq avg len:2333.977711||seq avg len:2386.664674  
    + |-  
    + | total:75.02 Mb||total:89.52 Mb||total:104.57 Mb||total:168.44 Mb||total:264.40 Mb||total:325.38 Mb  
    + |-  
    + | depth: 16.13X||depth: 19.25X||depth: 22.49X||depth: 36.22X||depth: 56.86X||depth: 69.97X  
    + |-  
    + | ||||||||||  
    + |-  
    + | seqs amount:26492||seqs amount:34981||seqs amount:40666||seqs amount:63760||seqs amount:98165||seqs amount:118901  
    + |-  
    + | seq avg len:2352.489884||seq avg len:2133.783826||seq avg len:2124.597010||seq avg len:2199.845561||seq avg len:2286.482249||seq avg len:2320.548322  
    + |-  
    + | total:62.32 Mb||total:74.64 Mb||total:86.40 Mb||total:140.26 Mb||total:224.45 Mb||total:275.92 Mb  
    + |-  
    + | depth: 13.40X||depth: 16.05X||depth: 18.58X||depth: 30.16X||depth: 48.27X||depth: 59.34X  
    + |-  
    + | ||||||||||  
    + |-  
    + | seqs amount:26666||||||seqs amount:64201||seqs amount:99285||seqs amount:120296  
    + |-  
    + | seq avg len:2309.110290||||||seq avg len:2150.165184||seq avg len:2221.782394||seq avg len:2252.656963  
    + |-  
    + | total:61.57 Mb||||||total:138.04 Mb||total:220.59 Mb||total:270.99 Mb  
    + |-  
    + | depth: 13.24X||||||depth: 29.69X||depth: 47.44X||depth: 58.28X  
    + |-  
    + | ||||||||||  
    + |-  
    + | seqs amount:25618||||||seqs amount:61415||seqs amount:95240||seqs amount:115080  
    + |-  
    + | seq avg len:2315.355024||||||seq avg len:2165.060164||seq avg len:2247.193879||seq avg len:2283.976060  
    + |-  
    + | total:59.31 Mb||||||total:132.97 Mb||total:214.02 Mb||total:262.84 Mb  
    + |-  
    + | depth: 12.76X||||||depth: 28.60X||depth: 46.03X||depth: 56.52X  
    + |-  
    + |  
    + |}  
  = Assembly =    = Assembly = 
  After read correction, PBcR can be used to ''de novo'' assembly by runCA or Mira3.    After read correction, PBcR can be used to ''de novo'' assembly by runCA or Mira3.