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After read correction, PBcR can be used to ''de novo'' assemble the genome using runCA or Mira3. |
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After read correction, PBcR can be used to ''de novo'' assemble the genome using runCA or Mira3. |
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We have assembled the genome with the all PBcR and the filtered PBcR (25X, using gatekeeper) by runCA, and evaluated the assemblies with [http://bioinf.spbau.ru/en/quast QUAST 2.2](reference genome and genes下載).
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We have assembled the genome with the all PBcR and the filtered PBcR (25X, using gatekeeper) by runCA
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runCA -p asm -d asm -s asm.spec PacBio_Illumia.frg > asm.out 2>&1 |
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runCA -p asm -d asm -s asm.spec PacBio_Illumia.frg > asm.out 2>&1 |
