Version Differences for Read Depths

(→Evaluation)
(→Evaluation)
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  |}    |} 
       
    + Four SMRT cell reads were corrected with raw, 100X, and 118X short reads. The PBcR were then filtered to 25X or directly assembled by runCA.  
    + {| {{table}} border="1"  
    + | align="center" style="background:#f0f0f0;"|''''''  
    + |-  
    + | Statistics without reference||4_raw_asm.ctg||4_raw_25X_asm.ctg||4_100X_asm.ctg||4_100X_25X_asm.ctg||4_118X_asm.ctg||4_118X_25X_asm.ctg  
    + |-  
    + | # contigs||286||51||123||23||71||40  
    + |-  
    + | Largest contig||532128||1812746||688723||1257198||983533||621920  
    + |-  
    + | Total length||6162978||5045811||5144868||4693193||4862387||4665855  
    + |-  
    + | N50||147254||834736||398131||694380||412226||285200  
    + |-  
    + | style="background:#f0f0f0;"| Misassemblies||||||||||||  
    + |-  
    + | # misassemblies||24||13||26||8||31||13  
    + |-  
    + | Misassembled contigs length||800651||3633076||2341550||2708632||2412628||1302367  
    + |-  
    + | Mismatches||||||||||||  
    + |-  
    + | # mismatches per 100 kbp||3.41||2.240||5.060||1.93||4.45||7.3  
    + |-  
    + | # indels per 100 kbp||1.36||0.97||5.21||3.82||4.08||5.71  
    + |-  
    + | # N's per 100 kbp||1.2||0.16||0.39||0.04||0.41||0  
    + |-  
    + | style="background:#f0f0f0;"| Genome statistics||||||||||||  
    + |-  
    + | Genome fraction (%)||100||100||99.74||99.337||99.798||98.559  
    + |-  
    + | Duplication ratio||1.331||1.089||1.112||1.019||1.052||1.022  
    + |-  
    + | # genes||4495 + 2 part||4494 + 3 part||4482 + 10 part||4470 + 9 part||4481 + 12 part||4413 + 36 part  
    + |-  
    + | NGA50||182232||476726||317322||694380||286770||214828  
    + |-  
    + |}