Version Differences for Read Depths

(→Evaluation)
(→Evaluation)
Line 256:
  |}    |} 
       
       
    + {| {{table}} border=1"1"  
    + | align="center" style="background:#f0f0f0;"|'''Statistics without reference'''  
    + | align="center" style="background:#f0f0f0;"|'''3_raw_asm.ctg'''  
    + | align="center" style="background:#f0f0f0;"|'''3_raw_25X_asm.ctg'''  
    + | align="center" style="background:#f0f0f0;"|'''3_100X_asm.ctg'''  
    + | align="center" style="background:#f0f0f0;"|'''3_100X_25X_asm.ctg'''  
    + | align="center" style="background:#f0f0f0;"|'''3_118X_asm.ctg'''  
    + | align="center" style="background:#f0f0f0;"|'''3_118X_25X_asm.ctg'''  
    + |-  
    + | # contigs||||||||||||  
    + |-  
    + | Largest contig||||||||||||  
    + |-  
    + | Total length||||||||||||  
    + |-  
    + | N50||||||||||||  
    + |-  
    + | style="background:#f0f0f0;"| Misassemblies||||||||||||  
    + |-  
    + | # misassemblies||||||||||||  
    + |-  
    + | Misassembled contigs length||||||||||||  
    + |-  
    + | style="background:#f0f0f0;"| Mismatches||||||||||||  
    + |-  
    + | # mismatches per 100 kbp||||||||||||  
    + |-  
    + | # indels per 100 kbp||||||||||||  
    + |-  
    + | # N's per 100 kbp||||||||||||  
    + |-  
    + | style="background:#f0f0f0;"| Genome statistics||||||||||||  
    + |-  
    + | Genome fraction (%)||||||||||||  
    + |-  
    + | Duplication ratio|||||||||||  
    + |-  
    + | # genes|| + part|| + part|| + part|| + part|| + part|| + part  
    + |-  
    + | NGA50||||||||||||  
    + |-  
    + |}  
       
       
  Four SMRT cell reads were corrected with raw, 100X, and 118X short reads. The PBcR were then filtered to 25X or directly assembled by runCA.    Four SMRT cell reads were corrected with raw, 100X, and 118X short reads. The PBcR were then filtered to 25X or directly assembled by runCA. 
  {| {{table}} border="1"    {| {{table}} border="1" 
Line 297:
  |-    |- 
  | NGA50||182232||476726||317322||694380||286770||214828    | NGA50||182232||476726||317322||694380||286770||214828 
    + |-  
    + |}  
       
    + {| {{table}} border="1"  
    + | align="center" style="background:#f0f0f0;"|'''Statistics without reference'''  
    + | align="center" style="background:#f0f0f0;"|'''4_raw_asm.ctg'''  
    + | align="center" style="background:#f0f0f0;"|'''4_raw_25X_asm.ctg'''  
    + | align="center" style="background:#f0f0f0;"|'''4_100X_asm.ctg'''  
    + | align="center" style="background:#f0f0f0;"|'''4_100X_25X_asm.ctg'''  
    + | align="center" style="background:#f0f0f0;"|'''4_118X_asm.ctg'''  
    + | align="center" style="background:#f0f0f0;"|'''4_118X_25X_asm.ctg'''  
    + |-  
    + | # contigs||||||||||||  
    + |-  
    + | Largest contig||||||||||||  
    + |-  
    + | Total length||||||||||||  
    + |-  
    + | N50||||||||||||  
    + |-  
    + | style="background:#f0f0f0;"| Misassemblies||||||||||||  
    + |-  
    + | # misassemblies||||||||||||  
    + |-  
    + | Misassembled contigs length||||||||||||  
    + |-  
    + | style="background:#f0f0f0;"| Mismatches||||||||||||  
    + |-  
    + | # mismatches per 100 kbp||||||||||||  
    + |-  
    + | # indels per 100 kbp||||||||||||  
    + |-  
    + | # N's per 100 kbp||||||||||||  
    + |-  
    + | style="background:#f0f0f0;"| Genome statistics||||||||||||  
    + |-  
    + | Genome fraction (%)||||||||||||  
    + |-  
    + | Duplication ratio|||||||||||  
    + |-  
    + | # genes|| + part|| + part|| + part|| + part|| + part|| + part  
    + |-  
    + | NGA50||||||||||||  
  |-    |- 
  |}    |}