Version Differences for Read Depths

Revision as of 7 February 2014 01:24

(→Evaluation)

Revision as of 7 February 2014 01:41

(→Evaluation)

 | align="center" style="background:#f0f0f0;"|'''3_118X_25X_asm.ctg'''
 |-
-								| # contigs||||||||||||
+								| # contigs||29||15||20||18||27||29
 |-
-								| Largest contig||||||||||||
+								| Largest contig||771076||1426293||981876||822480||1091515||520962
 |-
-								| Total length||||||||||||
+								| Total length||4672216||4666874||4656670||4613610||4650236||4593856
 |-
-								| N50||||||||||||
+								| N50||316212||323732||413464||600008||286035||218547
 |-
 | style="background:#f0f0f0;"| Misassemblies||||||||||||
-								| # misassemblies||||||||||||
+								| # misassemblies||6||4||10||6||7||7
 |-
-								| Misassembled contigs length||||||||||||
+								| Misassembled contigs length||1270144||1321332||2130162||1844194||1736227||1326538
 |-
 | style="background:#f0f0f0;"| Mismatches||||||||||||
-								| # mismatches per 100 kbp||||||||||||
+								| # mismatches per 100 kbp||2.07||2.14||1.67||1.48||4.35||5.09
 |-
-								| # indels per 100 kbp||||||||||||
+								| # indels per 100 kbp||0.98||0.65||5.54||3.31||2.88||3.76
 |-
-								| # N's per 100 kbp||||||||||||
+								| # N's per 100 kbp||0.06||0||0.17||0.02||0.04||0
 |-
 | style="background:#f0f0f0;"| Genome statistics||||||||||||
-								| Genome fraction (%)||||||||||||
+								| Genome fraction (%)||99.037||99.636||99.615||99.087||99.478||98.614
 |-
-								| Duplication ratio|||||||||||
+								| Duplication ratio||1.017||1.01||1.008||1.004||1.009|1.005
 |-
-								| # genes|| +  part|| +  part|| +  part|| +  part|| +  part|| +  part
+								| # genes||4439 + 24 part||4467 + 11 part||4472 + 19 part||4454 + 22 part||4457 + 21 part||4410 + 35 part
 |-
-								| NGA50||||||||||||
+								| NGA50||286997||323732||348693||599239||286035||193471
 |-
 |}