Version Differences for Read Depths

Revision as of 7 February 2014 01:42

(→Evaluation)

Revision as of 7 February 2014 02:02

(→Evaluation)

 | align="center" style="background:#f0f0f0;"|'''4_118X_25X_asm.ctg'''
 |-
-								| # contigs||||||||||||
+								| # contigs||40||12||21||12||21||26
 |-
-								| Largest contig||||||||||||
+								| Largest contig||532128||1812746||688723||1257198||983533||621920
 |-
-								| Total length||||||||||||
+								| Total length||4726973||4659487||4656544||4602600||4654299||4508804
 |-
-								| N50||||||||||||
+								| N50||180844||834736||398131||1071366||412226||285200
 |-
 | style="background:#f0f0f0;"| Misassemblies||||||||||||
-								| # misassemblies||||||||||||
+								| # misassemblies||7||8||8||6||15||9
 |-
-								| Misassembled contigs length||||||||||||
+								| Misassembled contigs length||736689||3595196||2252884||2698687||2362706||1274915
 |-
 | style="background:#f0f0f0;"| Mismatches||||||||||||
-								| # mismatches per 100 kbp||||||||||||
+								| # mismatches per 100 kbp||2.35||2.28||2.53||2||4.41||6.26
 |-
-								| # indels per 100 kbp||||||||||||
+								| # indels per 100 kbp||0.87||0.75||3.94||3.81||3.31||4.49
 |-
-								| # N's per 100 kbp||||||||||||
+								| # N's per 100 kbp||0.17||0.13||0.02||0.04||0.04||0
 |-
 | style="background:#f0f0f0;"| Genome statistics||||||||||||
-								| Genome fraction (%)||||||||||||
+								| Genome fraction (%)||99.193||99.215||99.62||98.967||99.687||97.023
 |-
-								| Duplication ratio|||||||||||
+								| Duplication ratio||1.028||1.012||1.008||1.003||1.009||1.003
 |-
-								| # genes|| +  part|| +  part|| +  part|| +  part|| +  part|| +  part
+								| # genes||4443 + 26 part||4456 + 12 part||4474 + 17 part||4452 + 11 part||4474 + 15 part||4344 + 37 part
 |-
-								| NGA50||||||||||||
+								| NGA50||182232||476726||317322||694380||286770||247828
 |-
 |}