Version Differences for Read Depths
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| |} | |} | ||
| + | {| {{table}} border="1" | ||
| + | | align="center" style="background:#f0f0f0;"|'''Statistics without reference''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''071634_raw_asm.ctg''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''192221_raw_asm.ctg''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''210845_raw_asm.ctg''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''071634_100X_asm.ctg''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''071634_118X_asm.ctg''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''192221_118X_asm.ctg''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''210845_118X_asm.ctg''' | ||
| + | |- | ||
| + | | # contigs||80||93||83||61||69||68||66 | ||
| + | |- | ||
| + | | Largest contig||745120||664876||562203||663399||434084||345313||437164 | ||
| + | |- | ||
| + | | Total length||4975695||5031560||5043217||4804004||4805579||4801310||4733683 | ||
| + | |- | ||
| + | | N50||356974||221472||324225||295449||179662||207976||186993 | ||
| + | |- | ||
| + | | style="background:#f0f0f0;"| Misassemblies|||||||||||||| | ||
| + | |- | ||
| + | | # misassemblies||11||17||21||10||13||20||15 | ||
| + | |- | ||
| + | | Misassembled contigs length||1552524||976207||2108892||1222277||782726||1156917||527873 | ||
| + | |- | ||
| + | | style="background:#f0f0f0;"| Mismatches|||||||||||||| | ||
| + | |- | ||
| + | | # mismatches per 100 kbp||3.32||2.91||3.06||7.08||6.4||10.33||4.13 | ||
| + | |- | ||
| + | | # indels per 100 kbp||2.98||1.38||1.01||13.15||5.2||5.54||2.69 | ||
| + | |- | ||
| + | | # N's per 100 kbp||0.38||0.12||0.22||0.4||0.37||0.4||0.23 | ||
| + | |- | ||
| + | | style="background:#f0f0f0;"| Genome statistics|||||||||||||| | ||
| + | |- | ||
| + | | Genome fraction (%)||99.97||100||100||99.304||99.424||99.522||98.712 | ||
| + | |- | ||
| + | | Duplication ratio||1.074||1.086||1.090||1.043||1.047||1.04||1.033 | ||
| + | |- | ||
| + | | # genes||4489 + 7 part||4490 + 7 part||4495 + 2 part||4461 + 25 part||4451 + 31 part||4459 + 28 part||4412 + 32 part | ||
| + | |- | ||
| + | | NGA50||357183||221098||279423||226118||179662||194634||191457 | ||
| + | |- | ||
| + | |} | ||
| Two SMRT cell reads were corrected with raw, 100X, and 118X short reads. The PBcR were then filtered to 25X or directly assembled by runCA. | Two SMRT cell reads were corrected with raw, 100X, and 118X short reads. The PBcR were then filtered to 25X or directly assembled by runCA. | ||
| {| {{table}} border="1" | {| {{table}} border="1" | ||