Version Differences for RunCA

(→Evaluation)
Line 122:
  | Total length||4798555||4933914||4612517||4629273||4635310||4744173||4666475||4690899    | Total length||4798555||4933914||4612517||4629273||4635310||4744173||4666475||4690899 
  |-    |- 
- | N50||412414||318728||1155479||498347||1478089||496729||1215597||1253429   + | N50||412414||318728||1155479||498347||1478089||678445||1215597||1253429  
  |-    |- 
  | style="background:#f0f0f0;"| Misassemblies||||||||||||||||    | style="background:#f0f0f0;"| Misassemblies|||||||||||||||| 
Line 128:
- | # misassemblies||8||6||6||10||10||8||8||6   + | # misassemblies||9||8||8||12||10||8||8||8  
  |-    |- 
  | Misassembled contigs length||1287728||1257103||2497244||1278777||3693737||1111214||1994551||2084097    | Misassembled contigs length||1287728||1257103||2497244||1278777||3693737||1111214||1994551||2084097 
Line 134:
  | # mismatches per 100 kbp||1.49||1.06||0.72||0.81||3.38||3.9||4.29||4.18    | # mismatches per 100 kbp||1.49||1.06||0.72||0.81||3.38||3.9||4.29||4.18 
  |-    |- 
- | # indels per 100 kbp||11.92||8.01||2.19||2.55||0.39||0.88||0.93||0.63   + | # indels per 100 kbp||11.04||7.93||2.17||2.35||0.39||0.86||0.5||0.52  
  |-    |- 
  | # N's per 100 kbp||0.15||0.04||0||0||0||0.08||0.02||0    | # N's per 100 kbp||0.15||0.04||0||0||0||0.08||0.02||0 
Line 142:
  | Genome fraction (%)||99.769||99.515||99.189||98.957||99.561||99.985||99.944||100    | Genome fraction (%)||99.769||99.515||99.189||98.957||99.561||99.985||99.944||100 
  |-    |- 
- | Duplication ratio||1.037||1.069||1.002||1.008||1.003||1.023||1.007||1.011   + | Duplication ratio||1.037||1.07||1.002||1.008||1.003||1.023||1.006||1.011  
  |-    |- 
- | # genes||4481 + 13 part||4469 + 14 part||4465 + 12 part||4454 + 15 part||4467 + 12 part||4491 + 6 part||4487 + 6 part||4492 + 5 part   + | # genes||4479 + 13 part||4469 + 14 part||4465 + 12 part||4454 + 15 part||4467 + 12 part||4491 + 6 part||4487 + 6 part||4492 + 5 part  
  |-    |- 
- | NGA50||411646||230980||694825||366166||670145||677677||877912||834940   + | NGA50||368011||230980||694825||340107||1392456||496729||768685||834919  
  |-    |- 
  |}    |}