Version Differences for RunCA

|}

{| {{table}} border="1"

| align="center" style="background:#f0f0f0;"|'''Statistics without reference'''

| align="center" style="background:#f0f0f0;"|'''w_25X_runCA2'''

|-

-

| # contigs||248||302||15||36||36||76||17||37

+

| # contigs||34||56||11||19||7||16||5||7

|-

| Largest contig||762617||578194||1341765||694845||2069213||1204169||2021284||1754178

-

| Total length||5539907||6343154||4656826||4814122||4943194||5322102||4800259||5002926

+

| Total length||4798555||4933914||4612517||4629273||4635310||4744173||4666475||4690899

|-

-

| N50||371897||142793||1155479||460790||1478089||496729||1215597||1253429

+

| N50||412414||318728||1155479||498347||1478089||496729||1215597||1253429

|-

| style="background:#f0f0f0;"| Misassemblies||||||||||||||||

-

| # misassemblies||36||38||8||14||12||17||11||15

+

| # misassemblies||8||6||6||10||10||8||8||6

|-

-

| Misassembled contigs length||1443585||1419385||2506591||1302083||3703087||1183356||2022749||2142054

+

| Misassembled contigs length||1287728||1257103||2497244||1278777||3693737||1111214||1994551||2084097

|-

| Mismatches||||||||||||||||

-

| # mismatches per 100 kbp||2.81||1.150||0.7||0.76||3.66||3.88||4.310||4.33

+

| # mismatches per 100 kbp||1.49||1.06||0.72||0.81||3.38||3.9||4.29||4.18

|-

-

| # indels per 100 kbp||12.97||8.02||2.19||2.54||0.52||0.86||1.06||0.65

+

| # indels per 100 kbp||11.92||8.01||2.19||2.55||0.39||0.88||0.93||0.63

|-

-

| # N's per 100 kbp||1.32||0.38||0||0||0||0.15||0.02||0.2

+

| # N's per 100 kbp||0.15||0.04||0||0||0||0.08||0.02||0

|-

| style="background:#f0f0f0;"| Genome statistics||||||||||||||||

-

| Genome fraction (%)||99.858||99.651||99.189||99.196||100||100||100||100

+

| Genome fraction (%)||99.769||99.515||99.189||98.957||99.561||99.985||99.944||100

|-

-

| Duplication ratio||1.195||1.373||1.012||1.046||1.066||1.148||1.035||1.079

+

| Duplication ratio||1.037||1.069||1.002||1.008||1.003||1.023||1.007||1.011

|-

-

| # genes||4484 + 10 part||4481 + 12 part||4466 + 11 part||4466 + 11 part||4494 + 3 part||4494 + 3 part||4494 + 3 part||4493 + 4 part

+

| # genes||4481 + 13 part||4469 + 14 part||4465 + 12 part||4454 + 15 part||4467 + 12 part||4491 + 6 part||4487 + 6 part||4492 + 5 part

|-

| NGA50||411646||230980||694825||366166||670145||677677||877912||834940

 |}
 {| {{table}} border="1"
 | align="center" style="background:#f0f0f0;"|'''Statistics without reference'''
 | align="center" style="background:#f0f0f0;"|'''w_25X_runCA2'''
 |-
-								| # contigs||248||302||15||36||36||76||17||37
+								| # contigs||34||56||11||19||7||16||5||7
 |-
 | Largest contig||762617||578194||1341765||694845||2069213||1204169||2021284||1754178
-								| Total length||5539907||6343154||4656826||4814122||4943194||5322102||4800259||5002926
+								| Total length||4798555||4933914||4612517||4629273||4635310||4744173||4666475||4690899
 |-
-								| N50||371897||142793||1155479||460790||1478089||496729||1215597||1253429
+								| N50||412414||318728||1155479||498347||1478089||496729||1215597||1253429
 |-
 | style="background:#f0f0f0;"| Misassemblies||||||||||||||||
-								| # misassemblies||36||38||8||14||12||17||11||15
+								| # misassemblies||8||6||6||10||10||8||8||6
 |-
-								| Misassembled contigs length||1443585||1419385||2506591||1302083||3703087||1183356||2022749||2142054
+								| Misassembled contigs length||1287728||1257103||2497244||1278777||3693737||1111214||1994551||2084097
 |-
 | Mismatches||||||||||||||||
-								| # mismatches per 100 kbp||2.81||1.150||0.7||0.76||3.66||3.88||4.310||4.33
+								| # mismatches per 100 kbp||1.49||1.06||0.72||0.81||3.38||3.9||4.29||4.18
 |-
-								| # indels per 100 kbp||12.97||8.02||2.19||2.54||0.52||0.86||1.06||0.65
+								| # indels per 100 kbp||11.92||8.01||2.19||2.55||0.39||0.88||0.93||0.63
 |-
-								| # N's per 100 kbp||1.32||0.38||0||0||0||0.15||0.02||0.2
+								| # N's per 100 kbp||0.15||0.04||0||0||0||0.08||0.02||0
 |-
 | style="background:#f0f0f0;"| Genome statistics||||||||||||||||
-								| Genome fraction (%)||99.858||99.651||99.189||99.196||100||100||100||100
+								| Genome fraction (%)||99.769||99.515||99.189||98.957||99.561||99.985||99.944||100
 |-
-								| Duplication ratio||1.195||1.373||1.012||1.046||1.066||1.148||1.035||1.079
+								| Duplication ratio||1.037||1.069||1.002||1.008||1.003||1.023||1.007||1.011
 |-
-								| # genes||4484 + 10 part||4481 + 12 part||4466 + 11 part||4466 + 11 part||4494 + 3 part||4494 + 3 part||4494 + 3 part||4493 + 4 part
+								| # genes||4481 + 13 part||4469 + 14 part||4465 + 12 part||4454 + 15 part||4467 + 12 part||4491 + 6 part||4487 + 6 part||4492 + 5 part
 |-
 | NGA50||411646||230980||694825||366166||670145||677677||877912||834940