Version Differences for S. pneumoniae

Revision as of 19 October 2013 02:17

(→Evaluation)

Revision as of 19 October 2013 02:31

(→Evaluation)

 |-
-								| # contigs||13||11||10||11
+								| # contigs||5||1||1||1
 |-
-								| Largest contig||3188540||3188818||3188847||3188802
+								| Largest contig||1340620||2162245||2151421||2153124
 |-
-								| Total length||4588701||4601792||4609235||4601762
+								| Total length||2140045||2162245||2151421||2153124
 |-
-								| N50||3188540||3188818||3188847||3188802
+								| N50||1340620||2162245||2151421||2153124
 |-
 | align="left" style="background:#f0f0f0;"|'''Misassemblies'''
-								| # misassemblies||12||16||20||19
+								| # misassemblies||1||4||3||1
 |-
-								|Misassembled contigs length ||4361060||4370092||4557570||4484253
+								|Misassembled contigs length ||1340620||2162245||2151421||2153124
 |-
 | align="left" style="background:#f0f0f0;"|'''Mismatches'''
-								|# mismatches per 100kbp ||3.77||3.48||4.8||6.43
+								|# mismatches per 100kbp ||2.15||5.7||2.05||2.05
 |-
-								|# indels per 100kbp ||5.13||3.52||4.87||5.61
+								|# indels per 100kbp ||1.08||3.52||0.93||1.07
 |-
-								|# N's per 100kbp ||0.09||0||0.13||0.07
+								|# N's per 100kbp ||0.14||0.05||0.09||172.96
 |-
 | align="left" style="background:#f0f0f0;"|'''Genome statistics'''
-								| Genome fraction (%)||99.683||99.932||99.948||99.945
+								| Genome fraction (%)||99.967||99.946||99.45||99.423
 |-
-								| Duplication ratio ||1.005||1.011||1.009||1.007
+								| Duplication ratio ||1.005||1.011||1.016||1.012
 |-
-								| # genes||4369 + 10 part　||4381 + 6 part　||4380+ 7 part　||4378 + 8 part
+								| # genes||2299 + 2 part　||2297 + 4 part　||2297+ 4 part　||2298 + 3 part
 |-
-								| NGA50 || 2938269 || 904505 || 2715665 || 3170709
+								| NGA50 ||1338442||1198037||1189098||1590348
 |-
 |}