Version Differences for S. pneumoniae
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(→Self-fraction data)
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| Line 41: | |||
| OVERWRITE=True\ | OVERWRITE=True\ | ||
| | tee prepare.out | | tee prepare.out | ||
| - | ==100X fragment reads== | ||
| + | ==50X coverage reads== | ||
| + | We randomly selected 50X coverage data from fragment library of raw data by prepare.sh. | ||
| + | PrepareAllPathsInputs.pl\ | ||
| + | DATA_DIR=$PWD/test.genome/data\ | ||
| + | PLOIDY=1\ | ||
| + | GENOME_SIZE=2165000\ | ||
| + | FRAG_COVERAGE=50\ | ||
| + | JUMP_COVERAGE=50\ | ||
| + | IN_GROUPS_CSV=in_groups.csv\ | ||
| + | IN_LIBS_CSV=in_libs.csv\ | ||
| + | OVERWRITE=True\ | ||
| + | | tee prepare.out | ||
| + | ==100X coverage reads== | ||
| We randomly selected 100X coverage data from fragment library of raw data by prepare.sh. | We randomly selected 100X coverage data from fragment library of raw data by prepare.sh. | ||
| Line 66: | |||
| OVERWRITE=True\ | OVERWRITE=True\ | ||
| | tee prepare.out | | tee prepare.out | ||
| == Evaluation == | == Evaluation == | ||