Version Differences for S. pneumoniae
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(→50X coverage reads)
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(→100X coverage reads)
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| Line 60: | |||
| We randomly selected 100X coverage data from fragment library of raw data by prepare.sh. | We randomly selected 100X coverage data from fragment library of raw data by prepare.sh. | ||
| - | Fragment library fraction = 100/475.12 = 0.21 <br> | ||
| PrepareAllPathsInputs.pl\ | PrepareAllPathsInputs.pl\ | ||
| DATA_DIR=$PWD/test.genome/data\ | DATA_DIR=$PWD/test.genome/data\ | ||
| Line 67: | |||
| - | FRAG_FRAC=0.21\ | + | GENOME_SIZE=2165000\ |
| - | JUMP_FRAC=0.558\ | + | FRAG_COVERAGE=100\ |
| + | JUMP_COVERAGE=100\ | ||
| IN_GROUPS_CSV=in_groups.csv\ | IN_GROUPS_CSV=in_groups.csv\ | ||
| IN_LIBS_CSV=in_libs.csv\ | IN_LIBS_CSV=in_libs.csv\ | ||
| Line 72: | |||
| + | | tee prepare.out | ||
| | tee prepare.out | | tee prepare.out | ||