Version Differences for S. pneumoniae
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(→100X coverage reads)
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(→50X coverage reads)
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| Line 57: | |||
| + | PrepareAllPathsInputs.pl\ | ||
| + | DATA_DIR=$PWD/test.genome/data\ | ||
| + | PLOIDY=1\ | ||
| + | JUMP_FRAC=1\ | ||
| + | GENOME_SIZE=2165000\ | ||
| + | FRAG_COVERAGE=50\ | ||
| + | IN_GROUPS_CSV=in_groups.csv\ | ||
| + | IN_LIBS_CSV=in_libs.csv\ | ||
| + | OVERWRITE=True\ | ||
| + | | tee prepare.out | ||
| ==100X coverage reads== | ==100X coverage reads== | ||
| We randomly selected 100X coverage data from fragment library and 100X coverage data from jumping library by prepare.sh. | We randomly selected 100X coverage data from fragment library and 100X coverage data from jumping library by prepare.sh. | ||