Version Differences for S. pneumoniae
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(→Evaluation)
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(→Evaluation)
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| {| {{table}} border="１" | {| {{table}} border="１" | ||
| | align="left" style="background:#f0f0f0;"|'''Basic statistics''' | | align="left" style="background:#f0f0f0;"|'''Basic statistics''' | ||
| + | | align="left" style="background:#f0f0f0;"|'''Published Data''' | ||
| | align="left" style="background:#f0f0f0;"|'''Raw Data''' | | align="left" style="background:#f0f0f0;"|'''Raw Data''' | ||
| - | | align="left" style="background:#f0f0f0;"|'''Website Data''' | + | | align="left" style="background:#f0f0f0;"|'''Fractional Data''' |
| - | | align="left" style="background:#f0f0f0;"|'''Self-fraction Data''' | + | | align="left" style="background:#f0f0f0;"|'''50X Coverage Data''' |
| - | | align="left" style="background:#f0f0f0;"|'''100 Coverage''' | + | | align="left" style="background:#f0f0f0;"|'''50X fragment with all jumping''' |
| + | | align="left" style="background:#f0f0f0;"|'''100X Coverage Data''' | ||
| + | | align="left" style="background:#f0f0f0;"|'''100X fragment with all jumping''' | ||
| |- | |- | ||
| - | | # contigs||6||4||4||4 | + | | # contigs||1||5||1||2||1||1||1 |
| |- | |- | ||
| - | | Largest contig||2135901||1663585||1671738||1664345 | + | | Largest contig||2162245||1340620||2151421||1189234||2149064||2150940||2153124 |
| |- | |- | ||
| - | | Total length||2144412||2161502||2160013||2156958 | + | | Total length||2162245||2140045||2151421||2146017||2149064||2150940||2153124 |
| |- | |- | ||
| - | | N50||2135901||1663585||1671738||1664345 | + | | N50||2162245||1340620||2151421||1189234||2149064||2150940||2153124 |
| |- | |- | ||
| | align="left" style="background:#f0f0f0;"|'''Misassemblies''' | | align="left" style="background:#f0f0f0;"|'''Misassemblies''' | ||
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| - | | # misassemblies||19||5||11||9 | + | | # misassemblies||4||1||3||0||1||3||1 |
| |- | |- | ||
| - | |Misassembled contigs length ||2138844||1663585||1949937||2154315 | + | |Misassembled contigs length ||2162245||1340620||2151421||0||2149064||2150940||2153124 |
| |- | |- | ||
| | align="left" style="background:#f0f0f0;"|'''Mismatches''' | | align="left" style="background:#f0f0f0;"|'''Mismatches''' | ||
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| - | |# mismatches per 100kbp ||4.9||2.62||2.59||3.33 | + | |# mismatches per 100kbp ||5.7||2.15||2.05||2.05||2.1||2.05||2.05 |
| |- | |- | ||
| - | |# indels per 100kbp ||17.33||1.5||11.78||14.39 | + | |# indels per 100kbp ||3.52||1.08||0.93||3.08||0.93||0.98||1.07 |
| |- | |- | ||
| - | |# N's per 100kbp ||1714.74||759.8||1505.69||994.27 | + | |# N's per 100kbp ||0.05||0.14||0.09||0.14||171.89||0.09||172.96 |
| |- | |- | ||
| | align="left" style="background:#f0f0f0;"|'''Genome statistics''' | | align="left" style="background:#f0f0f0;"|'''Genome statistics''' | ||
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| - | | Genome fraction (%)||97.204||98.798||98.624||98.72 | + | | Genome fraction (%)||99.946||99.967||99.45||99.239||99.239||99.43||99.423 |
| |- | |- | ||
| - | | Duplication ratio ||1.019||1.022||1.047||1.021 | + | | Duplication ratio ||1.011||1.005||1.016||1.015||1.017||1.016||1.012 |
| |- | |- | ||
| - | | # genes||2239 + 33 part ||2271 + 15 part ||2275 + 15 part ||2266 + 17 part | + | | # genes||2297 + 4 part ||2299 + 2 part ||2297 + 4 part||2294+ 4 part ||2294 + 4 part ||2297 + 4 part ||2298 + 3 part |
| |- | |- | ||
| - | | NGA50 ||224016||403409||397648||1533035 | + | | NGA50 ||1198037||1338442||1189098||1188680||1188680||1189098||1590348 |
| |- | |- | ||
| |} | |} | ||