Version Differences for S. pneumoniae

(→Evaluation)
(→Evaluation)
Line 164:
  | align="left" style="background:#f0f0f0;"|'''100X fragment with all jumping'''    | align="left" style="background:#f0f0f0;"|'''100X fragment with all jumping''' 
  |-    |- 
- | # contigs||1||5||1||2||1||1||1   + | # contigs||4||6||4||4||7||7||3  
  |-    |- 
- | Largest contig||2162245||1340620||2151421||1189234||2149064||2150940||2153124   + | Largest contig||1663585||2135901||1671738||1675149||1084537||1812035||1659817  
  |-    |- 
- | Total length||2162245||2140045||2151421||2146017||2149064||2150940||2153124   + | Total length||2161502||2144412||2160013||2163970||2166318||2157620||2148370  
  |-    |- 
- | N50||2162245||1340620||2151421||1189234||2149064||2150940||2153124   + | N50||1663585||2135901||1671738||1675149||1084537||1812035||1659817  
  |-    |- 
  | align="left" style="background:#f0f0f0;"|'''Misassemblies'''    | align="left" style="background:#f0f0f0;"|'''Misassemblies''' 
Line 176:
- | # misassemblies||4||1||3||0||1||3||1   + | # misassemblies||5||19||11||10||17||9||7  
  |-    |- 
- |Misassembled contigs length ||2162245||1340620||2151421||0||2149064||2150940||2153124   + |Misassembled contigs length ||1663585||2138844||1949937||1675149||2131766||2130729||1659817  
  |-    |- 
  | align="left" style="background:#f0f0f0;"|'''Mismatches'''    | align="left" style="background:#f0f0f0;"|'''Mismatches''' 
Line 182:
- |# mismatches per 100kbp ||5.7||2.15||2.05||2.05||2.1||2.05||2.05   + |# mismatches per 100kbp ||2.62||4.9||2.59||3.24||10.34||2.92||2.22  
  |-    |- 
- |# indels per 100kbp ||3.52||1.08||0.93||3.08||0.93||0.98||1.07   + |# indels per 100kbp ||1.5||17.33||11.78||7.38||4.39||1.69||13.48  
  |-    |- 
- |# N's per 100kbp ||0.05||0.14||0.09||0.14||171.89||0.09||172.96   + |# N's per 100kbp ||759.8||1714.74||1505.69||1609.26||1353.91||938.21||1268.03  
  |-    |- 
  | align="left" style="background:#f0f0f0;"|'''Genome statistics'''    | align="left" style="background:#f0f0f0;"|'''Genome statistics''' 
Line 190:
- | Genome fraction (%)||99.946||99.967||99.45||99.239||99.239||99.43||99.423   + | Genome fraction (%)||98.798||97.204||98.624||98.477||98.059||98.324||98.23  
  |-    |- 
- | Duplication ratio ||1.011||1.005||1.016||1.015||1.017||1.016||1.012   + | Duplication ratio ||1.022||1.019||1.047||1.027||1.061||1.044||1.032  
  |-    |- 
- | # genes||2297 + 4 part　||2299 + 2 part　||2297 + 4 part||2294+ 4 part　||2294 + 4 part ||2297 + 4 part ||2298 + 3 part   + | # genes||2271 + 15 part　||2239 + 33 part　||2275 + 15 part||2263+ 25 part　||2255 + 21 part ||2262 + 19 part ||2260 + 19 part  
  |-    |- 
- | NGA50 ||1198037||1338442||1189098||1188680||1188680||1189098||1590348   + | NGA50 ||403409||224016||397648||376923||313633||463639||483405  
  |-    |- 
  |}    |}