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Streptococcus pneumoniae TIGR4. The S. pneumoniae TIGR4 consists of a circular chromosome of 2,160,842 bp in length. The Illumina sequencing data were available at [ftp://ftp.broadinstitute.org/pub/papers/assembly/Ribeiro2012/ ALLPATHS-LG website], Please refer to [http://www.ncbi.nlm.nih.gov/pubmed/22829535 ''Finished bacterial genomes from shotgun sequence data.'' Genome Research 2012] for detail.
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Dataset 3, Streptococcus pneumoniae TIGR4. This dataset includes three libraries: fragment, jump and long reads. The S. pneumoniae TIGR4 consists of a circular chromosome of 2,160,842 bp in length. Please refer to [http://www.ncbi.nlm.nih.gov/pubmed/22829535 ''Finished bacterial genomes from shotgun sequence data.'' Genome Research 2012] for detail.
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==Published data==
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==Website data==
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The Illumina and pacbio data were downloaded from ALLPATHS-LG website : [ftp://ftp.broadinstitute.org/pub/papers/assembly/Ribeiro2012/data/strep_data.tar.gz strep_data.tar.gz] <br> |
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The Illumina and pacbio data were downloaded from ALLPATHS-LG website : [ftp://ftp.broadinstitute.org/pub/papers/assembly/Ribeiro2012/data/strep_data.tar.gz strep_data.tar.gz] <br> |
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Reads amount : 1067060 X2 <br> |
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Reads amount : 1067060 X2 <br> |
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Insert size : 180bp <br> |
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Insert size : 180bp <br> |
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Coverage : 88.89X <br>
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Coverage : 99.8X <br>
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'''Jumping library'''<br> |
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'''Jumping library'''<br> |
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Reads length : 93bp <br> |
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Reads length : 93bp <br> |
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Reads amount : 1161883 X2 <br>
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Reads amount : 1161884 X2 <br>
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Insert size : 3000bp <br> |
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Insert size : 3000bp <br> |
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Coverage : 100.0X <br>
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'''PacBio reads'''<br> |
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'''PacBio reads'''<br> |
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Reads average length : 1159.12bp <br> |
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Reads average length : 1159.12bp <br> |
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Coverage : 216.58X <br>
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Coverage : 216.6X <br>
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==Raw data== |
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==Raw data== |
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The raw data of website data from Sequence Read Archive (SRA)
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The raw Illumina data were obtained from Sequence Read Archive (SRA).
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'''Fragment library''' <br> |
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'''Fragment library''' <br> |
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Accession : [http://www.ncbi.nlm.nih.gov/sra/SRX110128 SRX110128] <br>
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Accession : [http://www.ncbi.nlm.nih.gov/sra/SRX110128 SRR387335] <br>
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Reads length : 101bp <br> |
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Reads length : 101bp <br> |
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Reads amount : 5706200 X2 <br> |
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Reads amount : 5706200 X2 <br> |
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Coverage : 475.33X <br>
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Coverage : 533.4X <br>
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'''Jumping library'''<br> |
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'''Jumping library'''<br> |
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Accession : [http://www.ncbi.nlm.nih.gov/sra/SRX105406 SRX105406] <br>
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Accession : [http://www.ncbi.nlm.nih.gov/sra/SRX105406 SRR364158] <br>
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'''PacBio reads''' <br>
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Coverage : 179.2X <br>
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Accession : [http://www.ncbi.nlm.nih.gov/sra/SRX109959 SRX109959],[http://www.ncbi.nlm.nih.gov/sra/SRX109958 SRX109958]
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==Fractional data== |
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==Fractional data== |
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We randomly selected the same fraction as website data from fragment and jumping library of raw data by prepare.sh. |
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We randomly selected the same fraction as website data from fragment and jumping library of raw data by prepare.sh. |
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{| {{table}} border="１" |
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{| {{table}} border="１" |
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| align="left" style="background:#f0f0f0;"|'''Basic statistics''' |
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| align="left" style="background:#f0f0f0;"|'''Basic statistics''' |
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| align="left" style="background:#f0f0f0;"|'''Published Data'''
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| align="left" style="background:#f0f0f0;"|'''Website Data'''
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| align="left" style="background:#f0f0f0;"|'''Raw Data''' |
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| align="left" style="background:#f0f0f0;"|'''Raw Data''' |
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| align="left" style="background:#f0f0f0;"|'''Fractional Data''' |
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| align="left" style="background:#f0f0f0;"|'''Fractional Data''' |
