Version Differences for SCA

Revision as of 20 January 2014 20:40

(→DataSet1)

Revision as of 20 January 2014 20:51

(→DataSet2)

 |-
 |}
 								=DataSet3=
 								==Performance==
 								{| {{table}} border="1"
 								| align="center" style="background:#f0f0f0;"|'''Statistics without reference '''
 								| align="center" style="background:#f0f0f0;"|'''All Data'''
 								| align="center" style="background:#f0f0f0;"|'''4 SMRT cells : 1st Set'''
 								| align="center" style="background:#f0f0f0;"|'''4 SMRT cells : 2nd Set'''
 								| align="center" style="background:#f0f0f0;"|'''4 SMRT cells : 3rd Set'''
 								|-
 								|# contigs||3||3||3||6
 								|-
 								|Largest contig|| 2 934 267||2 927 454||2 929 942||2 226 051
 								|-
 								|Total length||5 178 932||5 176 592||5 176 771||5 182 410
 								|-
 								|N50||2 934 267||2 927 454||2 929 942|2 133 457
 								|-
 								| style="background:#f0f0f0;"| '''Misassemblies'''||||||||
 								|-
 								|# misassemblies||0||1||0||1
 								|-
 								|Misassembled contigs length ||0||2 240 169||0||13 124
 								|-
 								| style="background:#f0f0f0;"| '''Mismatches'''||||||||
 								|-
 								|# mismatches per 100kbp||0||0.02||0.06||6.45
 								|-
 								|# indels per 100kbp||1.05||0.54||0.6||1.88
 								|-
 								|# N's per 100kbp ||0||0||0||0
 								|-
 								| style="background:#f0f0f0;"| '''Genome Statistics'''||||||||
 								|-
 								|Genome fraction(%) ||100||100||100||99.936
 								|-
 								|Duplication ratio ||1.003||1.003||1.003||1.006
 								|-
 								|# genes ||4338+1 part||4338+1 part||4338+1 part||4335+4 part
 								|-
 								|NGA50 ||2 934 267||2 927 454||2 929 942||2 133 457
 								|-
 								|'''Running Time'''||24hr 56m||17hr 41m||18hr 14m||17hr 04m
 								|-
 								|}