Version Differences for SCA

Revision as of 20 January 2014 20:51

(→DataSet2)

Revision as of 20 January 2014 21:09

(→Performance)

 | align="center" style="background:#f0f0f0;"|'''4 SMRT cells : 3rd Set'''
 |-
-								|# contigs||3||3||3||6
+								|# contigs||1||3||3||3
 |-
-								|Largest contig|| 2 934 267||2 927 454||2 929 942||2 226 051
+								|Largest contig||5 163 983||2 232 679||2 236 613||2 237 949
 |-
-								|Total length||5 178 932||5 176 592||5 176 771||5 182 410
+								|Total length||5 163 983||5 161 276||5 165 518||5 166 563
 |-
-								|N50||2 934 267||2 927 454||2 929 942|2 133 457
+								|N50||5 163 983||2 043 590||2 044 147|2 135 225
 |-
 | style="background:#f0f0f0;"| '''Misassemblies'''||||||||
-								|# misassemblies||0||1||0||1
+								|# misassemblies||1||0||0||0
 |-
-								|Misassembled contigs length ||0||2 240 169||0||13 124
+								|Misassembled contigs length ||5 163 983||0||0||0
 |-
 | style="background:#f0f0f0;"| '''Mismatches'''||||||||
-								|# mismatches per 100kbp||0||0.02||0.06||6.45
+								|# mismatches per 100kbp||8.41||9.960||8.27||10.29
 |-
-								|# indels per 100kbp||1.05||0.54||0.6||1.88
+								|# indels per 100kbp||2.19||21.34||13.29||14.78
 |-
 |# N's per 100kbp ||0||0||0||0
 | style="background:#f0f0f0;"| '''Genome Statistics'''||||||||
 |-
-								|Genome fraction(%) ||100||100||100||99.936
+								|Genome fraction(%) ||99.919||99.864||99.907||99.89
 |-
-								|Duplication ratio ||1.003||1.003||1.003||1.006
+								|Duplication ratio ||1.001||1.001||1.002||1.002
 |-
-								|# genes ||4338+1 part||4338+1 part||4338+1 part||4335+4 part
+								|# genes ||4335+3 part||4330+5 part||4333+5 part||4333+3 part
 |-
-								|NGA50 ||2 934 267||2 927 454||2 929 942||2 133 457
+								|NGA50 ||4 300 532||2 043 590||2 044 147||2 135 225
 |-
-								|'''Running Time'''||24hr 56m||17hr 41m||18hr 14m||17hr 04m
+								|'''Running Time'''||21hr 36m||11hr 39m||12hr 26m||12hr 12m
 |-
 |}