Version Differences for SCA
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(→Performance)
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(→Performance)
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| Line 226: | |||
| |- | |- | ||
| - | |# contigs||2 | + | |# contigs||1 |
| |- | |- | ||
| - | |Largest contig||4 656 681 | + | |Largest contig||4 656257 |
| |- | |- | ||
| - | |Total length||4 672 546 | + | |Total length||4 656 257 |
| |- | |- | ||
| - | |N50||4 656 681 | + | |N50||4 656 257 |
| |- | |- | ||
| | style="background:#f0f0f0;"| '''Misassemblies'''|| | | style="background:#f0f0f0;"| '''Misassemblies'''|| | ||
| Line 238: | |||
| - | |# misassemblies||9 | + | |# misassemblies||8 |
| |- | |- | ||
| - | |Misassembled contigs length ||4 672 546 | + | |Misassembled contigs length ||4 656 257 |
| |- | |- | ||
| | style="background:#f0f0f0;"| '''Mismatches'''|| | | style="background:#f0f0f0;"| '''Mismatches'''|| | ||
| Line 244: | |||
| - | |# mismatches per 100kbp||0.15 | + | |# mismatches per 100kbp||0.22 |
| |- | |- | ||
| - | |# indels per 100kbp||4.87 | + | |# indels per 100kbp||13.23 |
| |- | |- | ||
| |# N's per 100kbp ||0 | |# N's per 100kbp ||0 | ||
| Line 252: | |||
| |Genome fraction(%) ||100 | |Genome fraction(%) ||100 | ||
| |- | |- | ||
| - | |Duplication ratio ||1.007 | + | |Duplication ratio ||1.004 |
| |- | |- | ||
| |# genes ||4494+3 part | |# genes ||4494+3 part | ||
| Line 258: | |||
| - | |NGA50 ||2 995 500 | + | |NGA50 ||2 995 284 |
| |- | |- | ||
| - | |'''Running Time'''||16hr 40m | + | | style="background:#f0f0f0;"| '''Genome Statistics'''|| |
| |- | |- | ||
| + | |PacBioToCA||13hr 01m | ||
| + | |- | ||
| + | |runCA||17hr 58m | ||
| + | |- | ||
| + | |Total||30hr 59m | ||
| |} | |} | ||