Version Differences for SCA
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(→Dataset 9 (E. coli K-12, P4-C2 chemistry, 20 Kbp, 1 SMRT cell))
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(→Dataset 5 (E. coli K-12 MG1655, 17 SMRT cells))
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| Line 4: | |||
| We used all SMRT cells and randomly selected four, six and eight SMRT cells three times for each, and evaluated the assemblies by QUAST against the reference genome ([ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_K_12_substr__MG1655_uid57779/ NC_000913]) and [[Media: Ec_gene_result.ncbi | Ec_gene_list]]. ([http://sb.nhri.org.tw/comps/quast/SCA/D5/report.html more detail]) | We used all SMRT cells and randomly selected four, six and eight SMRT cells three times for each, and evaluated the assemblies by QUAST against the reference genome ([ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_K_12_substr__MG1655_uid57779/ NC_000913]) and [[Media: Ec_gene_result.ncbi | Ec_gene_list]]. ([http://sb.nhri.org.tw/comps/quast/SCA/D5/report.html more detail]) | ||
| + | pacBioToCA -length 500 -partitions 200 -l pacbio -t 6 -s ../pacbio.spec -fastq Filtered_four.fastq longReads=1 genomeSize=4650000 | ||
| ==Performance== | ==Performance== | ||
| {| {{table}} border="1" | {| {{table}} border="1" | ||