| |
python trimFastqByQVWindow.py --qvCut=54.5 --out=trimmed.pacbio.fastq ../pacbio.fastq |
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python trimFastqByQVWindow.py --qvCut=54.5 --out=trimmed.pacbio.fastq ../pacbio.fastq |
| |
|
+ |
java convertFastqToFastaAndQual ../trimmed.pacbio.fastq ../trimmed.pacbio.fasta ../trimmed.pacbio.qual
|
| |
|
+ |
convert-fasta-to-v2.pl -l Pacbio -s trimmed.pacbio.fasta -q trimmed.pacbio.qual > trimmed.pacbio.frg
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| |
gatekeeper -T -F -o asm.gkpStore trimmed.pacbio.frg |
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gatekeeper -T -F -o asm.gkpStore trimmed.pacbio.frg |
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gatekeeper -dumpfasta 25X_Clr -longestlength 0 116250000 asm.gkpStore |
|
gatekeeper -dumpfasta 25X_Clr -longestlength 0 116250000 asm.gkpStore |
