Version Differences for SCA
| Line 7: | |||
| pacBioToCA -length 500 -partitions 200 -l pacbio -t 6 -s ../pacbio.spec -fastq Filtered_four.fastq longReads=1 genomeSize=4650000 | pacBioToCA -length 500 -partitions 200 -l pacbio -t 6 -s ../pacbio.spec -fastq Filtered_four.fastq longReads=1 genomeSize=4650000 | ||
| - | 2. Trimming corrected long reads | + | 2. Trimming the corrected long reads |
| python trimFastqByQVWindow.py --qvCut=54.5 --out=trimmed.pacbio.fastq pacbio.fastq | python trimFastqByQVWindow.py --qvCut=54.5 --out=trimmed.pacbio.fastq pacbio.fastq | ||