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Following we used ''E. coli'' as an example to show the steps
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Following we used ''E. coli'' as an example to show the steps and all the necessary program could be downloaded from
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1. Long reads self-correction |
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1. Long reads self-correction |
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pacBioToCA -length 500 -partitions 200 -l pacbio -t 6 -s ../pacbio.spec -fastq Filtered_four.fastq longReads=1 genomeSize=4650000
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pacBioToCA -length 500 -partitions 200 -l pacbio -t 6 -s pacbio.spec -fastq Filtered_four.fastq longReads=1 genomeSize=4650000
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2. Trimming the corrected long reads |
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2. Trimming the corrected long reads |
