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* '''Evaluated by QUAST'''
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: [http://bioinf.spbau.ru/en/quast/ QUAST] (QUAST v2.2)
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: Running QUAST requires [[Media: Ec_gene_result.ncbi | Ec_gene_list]] and [ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_K_12_substr__MG1655_uid57779/ NC_000913.fna]. There are 4497 genes in total.
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*'''Score with QUAST: With PacBio Long Reads''' [http://sb.nhri.org.tw/comps/quast/Allpaths-LG/E_coli/report.html more detail]
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{| {{table}} border="１"
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| align="left" style="background:#f0f0f0;"|'''Basic statistics'''
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| align="left" style="background:#f0f0f0;"|'''Website data '''
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| align="left" style="background:#f0f0f0;"|'''Raw Data'''
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| align="left" style="background:#f0f0f0;"|'''Fractional Data'''
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| align="left" style="background:#f0f0f0;"|'''50X coverage'''
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| align="left" style="background:#f0f0f0;"|'''100X coverage'''
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|-
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| # contigs||[[Media:alg_d1_web.fasta | 1]]||[[Media:alg_d1_raw.fasta | 14]]||[[Media:alg_d1_frac.fasta | 1]]||[[Media:alg_d1_50X.fasta | 1]]||[[Media:alg_d1_100X.fasta | 1]]
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|-
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| Largest contig||4638970||4625005||4638970||4638970||4638970
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|-
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| Total length||4638970||4652215||4638970||4638970||4638970
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|-
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| N50||4638970||4625005||4638970||4638970||4638970
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|-
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| align="left" style="background:#f0f0f0;"|[[Media: allpaths_d1.pdf | '''Misassemblies''']]
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|-
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| # misassemblies||1||5||1||1||1
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|-
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|Misassembled contigs length ||4638970||4625005||4638970||4638970||4638970
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|-
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| align="left" style="background:#f0f0f0;"|'''Mismatches'''
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|-
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|# mismatches per 100kbp ||0.11||1.06||0.06||0.09||0.06
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|-
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|# indels per 100kbp ||0.09||0.61||0.09||0.09||0.09
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|-
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|# N's per 100kbp ||0||282.94||0||0.04||0
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|-
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| align="left" style="background:#f0f0f0;"|'''Genome statistics'''
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|-
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| Genome fraction (%)||99.983||99.418||99.983||99.983||99.983
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|-
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| Duplication ratio ||1||1.013||1||1||1
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|-
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| # genes||4494 + 1 part||4471 + 2 part ||4494 + 1 part ||4494 + 1 part||4494 + 1 part
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|-
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| NGA50 || 4638970 || 2714032 || 3763133 || 4209920 || 3762305
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|-
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| align="left" style="background:#f0f0f0;"|''' Running Time '''|| 42m ||2hr 35m||35m ||35m || 41m
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|-
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|}
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[[Media: allpaths_d1_summary.pdf | '''Misassemblies''']] for Adobe reader.
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*'''Score with QUAST: Without PacBio Long Reads ''' [http://sb.nhri.org.tw/comps/quast/Allpaths-LG/E_coli_nopac/report.html more detail]
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{| {{table}} border="１"
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| align="left" style="background:#f0f0f0;"|'''Basic statistics'''
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| align="left" style="background:#f0f0f0;"|'''Website data'''
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| align="left" style="background:#f0f0f0;"|'''Raw Data'''
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| align="left" style="background:#f0f0f0;"|'''Fractional Data'''
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| align="left" style="background:#f0f0f0;"|'''50X coverage'''
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| align="left" style="background:#f0f0f0;"|'''100X coverage'''
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|-
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| # contigs||[[Media:alg_d1_web_nopac.fasta | 2]]||[[Media:alg_d1_raw_nopac.fasta | 1]]||[[Media:alg_d1_frac_nopac.fasta | 5]]||[[Media:alg_d1_50X_nopac.fasta | 3]]||[[Media:alg_d1_100X_onpac.fasta | 2]]
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|-
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| Largest contig||4631220||4633080||4575759||4629108||4638312
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|-
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| Total length||4633146||4633080||4698903||4633082||4640072
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|-
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| N50||4631220||4633080||4575759||4629108||4638312
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|-
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| align="left" style="background:#f0f0f0;"|[[Media: allpaths_D1_nopac.pdf | '''Misassemblies''']]
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|-
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| # misassemblies||3||7||8||8||5
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|-
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|Misassembled contigs length ||4631220||4633080||4577746||4631095||4638312
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|-
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| align="left" style="background:#f0f0f0;"|'''Mismatches'''
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|-
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|# mismatches per 100kbp ||1.19||1.42||2.84||2.52||2.26
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|-
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|# indels per 100kbp ||1.13||0.83||3.26||1.24||1.85
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|-
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|# N's per 100kbp ||533.22||1545.02||698.87||703.96||760.38
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|-
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| align="left" style="background:#f0f0f0;"|'''Genome statistics'''
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|-
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| Genome fraction (%)||99.345||98.343||99.265||99.136||99.272
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|-
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| Duplication ratio ||1.012||1.016||1.021||1.008||1.008
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|-
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| # genes||4465 + 11 part ||4395 + 31 part ||4460 + 14 part ||4451 + 13 part||4455 + 14 part
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|-
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| NGA50 ||3180483||687701||654008||2675325||694154
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|-
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| align="left" style="background:#f0f0f0;"|''' Running Time '''|| 28m ||2hr 01m||31m ||28m || 32m
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|-
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|}
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[[Media: allpaths_d1_nopac_summary.pdf | '''Misassemblies''']] for Adobe reader.
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