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* '''Evaluated by QUAST'''
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: [http://bioinf.spbau.ru/en/quast/ QUAST] (QUAST v2.3)
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: Running QUAST requires [[Media: Ec_gene_result.ncbi | Ec_gene_list]] and [ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_K_12_substr__MG1655_uid57779/ NC_000913.fna]. There are 4497 genes in total.
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*'''Score with QUAST: With PacBio Long Reads''' [ more detail]
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{| {{table}} border="１"
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| align="left" style="background:#f0f0f0;"|'''Basic statistics'''
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| align="left" style="background:#f0f0f0;"|'''Website data '''
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| align="left" style="background:#f0f0f0;"|'''Raw Data'''
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|-
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| # contigs||[[Media:spd_d1_web.fasta | 1]]||[[Media:spd_d1_raw.fasta | 14]]
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|-
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| Largest contig||4638970||4625005
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|-
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| Total length||4638970||4652215
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|-
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| N50||4638970||4625005
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|-
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| align="left" style="background:#f0f0f0;"|[[Media: spades_d1.pdf | '''Misassemblies''']]
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|-
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| # misassemblies||1||5
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|-
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|Misassembled contigs length ||4638970||4625005
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|-
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| align="left" style="background:#f0f0f0;"|'''Mismatches'''
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|-
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|# mismatches per 100kbp ||0.11||1.06
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|-
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|# indels per 100kbp ||0.09||0.61
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|-
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|# N's per 100kbp ||0||282.94
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|-
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| align="left" style="background:#f0f0f0;"|'''Genome statistics'''
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|-
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| Genome fraction (%)||99.983||99.418
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|-
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| Duplication ratio ||1||1.013
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|-
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| # genes||4494 + 1 part||4471 + 2 part t
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|-
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| NGA50 || 4638970 || 2714032
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|-
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| align="left" style="background:#f0f0f0;"|''' Running Time '''|| 42m ||2hr 35m
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|-
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|}
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[[Media: spades_d1_summary.pdf | '''Misassemblies''']] for Adobe reader.
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*'''Score with QUAST: Without PacBio Long Reads ''' [ more detail]
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{| {{table}} border="１"
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| align="left" style="background:#f0f0f0;"|'''Basic statistics'''
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| align="left" style="background:#f0f0f0;"|'''Website data'''
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| align="left" style="background:#f0f0f0;"|'''Raw Data'''
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|-
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| # contigs||[[Media:spd_d1_web_nopac.fasta | 2]]||[[Media:spd_d1_raw_nopac.fasta | 1]]
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|-
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| Largest contig||4631220||4633080
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|-
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| Total length||4633146||4633080
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|-
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| N50||4631220||4633080
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|-
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| align="left" style="background:#f0f0f0;"|[[Media: spades_D1_nopac.pdf | '''Misassemblies''']]
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|-
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| # misassemblies||3||7
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|-
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|Misassembled contigs length ||4631220||4633080
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|-
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| align="left" style="background:#f0f0f0;"|'''Mismatches'''
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|-
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|# mismatches per 100kbp ||1.19||1.42
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|-
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|# indels per 100kbp ||1.13||0.83
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|-
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|# N's per 100kbp ||533.22||1545.02
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|-
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| align="left" style="background:#f0f0f0;"|'''Genome statistics'''
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|-
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| Genome fraction (%)||99.345||98.343
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|-
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| Duplication ratio ||1.012||1.016
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|-
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| # genes||4465 + 11 part ||4395 + 31 part
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|-
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| NGA50 ||3180483||687701
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|-
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| align="left" style="background:#f0f0f0;"|''' Running Time '''|| 28m ||2hr 01m
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|-
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|}
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[[Media: spades_d1_nopac_summary.pdf | '''Misassemblies''']] for Adobe reader.
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