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We used [[ E. coli | Dataset 1]], ''Escherichia coli'' K-12 MG1655 and with single SMRT cell long reads of [[ Data | Dataset 5]] (m120208_071634) |
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We used [[ E. coli | Dataset 1]], ''Escherichia coli'' K-12 MG1655 and with single SMRT cell long reads of [[ Data | Dataset 5]] (m120208_071634) |
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spades.py --pe1-1 frq_1.fastq --pe1-2 frag_2.fastq --mp1-1 jump1_1.fastq --mp1-2 jump1_2.fastq --mp2-1 jump2_1.fastq --mp2-2 jump2_2.fastq --pacbio long.fasta
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spades.py --pe1-1 frq_1.fastq --pe1-2 frag_2.fastq --mp1-1 jump1_1.fastq --mp1-2 jump1_2.fastq --mp2-1 jump2_1.fastq --mp2-2 jump2_2.fastq --pacbio long.fasta -o output
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spades.py --pe1-1 frq_1.fastq --pe1-2 frag_2.fastq --mp1-1 jump1_1.fastq --mp1-2 jump1_2.fastq --mp2-1 jump2_1.fastq --mp2-2 jump2_2.fastq
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spades.py --pe1-1 frq_1.fastq --pe1-2 frag_2.fastq --mp1-1 jump1_1.fastq --mp1-2 jump1_2.fastq --mp2-1 jump2_1.fastq --mp2-2 jump2_2.fastq -o output
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