| Line 14: |
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| align="left" style="background:#f0f0f0;"|'''Raw Data with D5 single SMRT cell''' |
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| align="left" style="background:#f0f0f0;"|'''Raw Data with D5 single SMRT cell''' |
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|- |
|
|- |
| - |
| # contigs||[[Media:spd_d1_web.fasta | 1]]||[[Media:spd_d1_raw.fasta | 14]]
|
+ |
| # contigs||[[Media:spd_d1_web.fasta | 16]]||[[Media:spd_d1_raw.fasta | 28]] || [[Media:spd_d1_raw_d5_single.fasta|23]]
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| |
|- |
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|- |
| - |
| Largest contig||4638970||4625005
|
+ |
| Largest contig|1090659||1749262||3014973
|
| |
|- |
|
|- |
| - |
| Total length||4638970||4652215
|
+ |
| Total length||4611695||4630525||4634373
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| |
|- |
|
|- |
| - |
| N50||4638970||4625005
|
+ |
| N50||692096||1092719||3014973
|
| |
|- |
|
|- |
| |
| align="left" style="background:#f0f0f0;"|[[Media: spades_d1.pdf | '''Misassemblies''']] |
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| align="left" style="background:#f0f0f0;"|[[Media: spades_d1.pdf | '''Misassemblies''']] |
| Line 26: |
| - |
| # misassemblies||1||5
|
+ |
| # misassemblies||5||3||1
|
| |
|- |
|
|- |
| - |
|Misassembled contigs length ||4638970||4625005
|
+ |
|Misassembled contigs length ||1844546||2841981||3014973
|
| |
|- |
|
|- |
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| align="left" style="background:#f0f0f0;"|'''Mismatches''' |
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| align="left" style="background:#f0f0f0;"|'''Mismatches''' |
| Line 32: |
| - |
|# mismatches per 100kbp ||0.11||1.06
|
+ |
|# mismatches per 100kbp ||9.36||8.62||8.7
|
| |
|- |
|
|- |
| - |
|# indels per 100kbp ||0.09||0.61
|
+ |
|# indels per 100kbp |0.76||0.85||0.63
|
| |
|- |
|
|- |
| - |
|# N's per 100kbp ||0||282.94
|
+ |
|# N's per 100kbp ||92.46||31.31||7.94
|
| |
|- |
|
|- |
| |
| align="left" style="background:#f0f0f0;"|'''Genome statistics''' |
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| align="left" style="background:#f0f0f0;"|'''Genome statistics''' |
| Line 40: |
| - |
| Genome fraction (%)||99.983||99.418
|
+ |
| Genome fraction (%)||98.951||99.459||99.605
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| |
|- |
|
|- |
| - |
| Duplication ratio ||1||1.013
|
+ |
| Duplication ratio ||1.004||1.001||1.001
|
| |
|- |
|
|- |
| - |
| # genes||4494 + 1 part||4471 + 2 part t
|
+ |
| # genes||4459 + 13 part||4470 + 13 part||4479 + 3 part
|
| |
|- |
|
|- |
| - |
| NGA50 || 4638970 || 2714032
|
+ |
| NGA50 || 657193||694449||2497974
|
| |
|- |
|
|- |
| - |
| align="left" style="background:#f0f0f0;"|''' Running Time '''|| 42m ||2hr 35m
|
+ |
| align="left" style="background:#f0f0f0;"|''' Running Time '''|| 27m 43s || 1 hr 39m 35s ||
|
| |
|- |
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|- |
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|} |
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|} |
