Version Differences for SPAdes - D1 and D5

We used [[ E. coli | Dataset 1]], ''Escherichia coli'' K-12 MG1655 and with single SMRT cell long reads of [[ Data | Dataset 5]] (m120208_071634)

-

spades.py --pe1-1 frq_1.fastq --pe1-2 frag_2.fastq --mp1-1 jump1_1.fastq --mp1-2 jump1_2.fastq --mp2-1 jump2_1.fastq --mp2-2 jump2_2.fastq --pacbio long.fasta -o output

+

spades.py --pe1-1 frag_1.fastq --pe1-2 frag_2.fastq --mp1-1 jump1_1.fastq --mp1-2 jump1_2.fastq --mp2-1 jump2_1.fastq --mp2-2 jump2_2.fastq --pacbio long.fasta -o output

-

spades.py --pe1-1 frq_1.fastq --pe1-2 frag_2.fastq --mp1-1 jump1_1.fastq --mp1-2 jump1_2.fastq --mp2-1 jump2_1.fastq --mp2-2 jump2_2.fastq -o output

+

spades.py --pe1-1 frag_1.fastq --pe1-2 frag_2.fastq --mp1-1 jump1_1.fastq --mp1-2 jump1_2.fastq --mp2-1 jump2_1.fastq --mp2-2 jump2_2.fastq -o output

== Evaluation ==

 We used [[ E. coli | Dataset 1]], ''Escherichia coli'' K-12 MG1655 and with single SMRT cell long reads of [[ Data | Dataset 5]] (m120208_071634)
-								 spades.py --pe1-1 frq_1.fastq --pe1-2 frag_2.fastq --mp1-1 jump1_1.fastq --mp1-2 jump1_2.fastq --mp2-1 jump2_1.fastq --mp2-2 jump2_2.fastq --pacbio long.fasta -o output
+								 spades.py --pe1-1 frag_1.fastq --pe1-2 frag_2.fastq --mp1-1 jump1_1.fastq --mp1-2 jump1_2.fastq --mp2-1 jump2_1.fastq --mp2-2 jump2_2.fastq --pacbio long.fasta -o output
-								 spades.py --pe1-1 frq_1.fastq --pe1-2 frag_2.fastq --mp1-1 jump1_1.fastq --mp1-2 jump1_2.fastq --mp2-1 jump2_1.fastq --mp2-2 jump2_2.fastq -o output
+								 spades.py --pe1-1 frag_1.fastq --pe1-2 frag_2.fastq --mp1-1 jump1_1.fastq --mp1-2 jump1_2.fastq --mp2-1 jump2_1.fastq --mp2-2 jump2_2.fastq -o output
 == Evaluation ==